SMTL ID : 1oni.1 (2 other biounits)

Crystal structure of a human p14.5, a translational inhibitor reveals different mode of ligand binding near the invariant residues of the Yjgf/UK114 protein family

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-trimer

Ligands

5 x BEZ: BENZOIC ACID(Non-covalent)

BEZ.1: 9 residues within 4Å: Chain A: F.90, R.108, A.110 Chain B: Y.22, G.36, I.38, P.117, E.123 Ligands: BEZ.2 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain B Water bridges: A:R.108 Salt bridges: A:R.108 Hydrophobic interactions: B:Y.22, B:I.38, B:P.117 BEZ.2: 7 residues within 4Å: Chain A: F.90, N.91, N.94, R.108 Chain B: I.19, G.20 Ligands: BEZ.1 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:I.19, A:F.90 Hydrogen bonds: A:N.94 Salt bridges: A:R.108 BEZ.3: 8 residues within 4Å: Chain B: R.108, A.110 Chain C: Y.22, G.36, I.38, P.117, E.123 Ligands: BEZ.4 6 PLIP interactions: 2 interactions with chain B, 4 interactions with chain C Hydrogen bonds: B:R.108 Salt bridges: B:R.108 Hydrophobic interactions: C:Y.22, C:I.38, C:P.117, C:P.117 BEZ.4: 8 residues within 4Å: Chain B: L.84, I.87, F.90, A.110 Chain C: I.19, P.117, K.118 Ligands: BEZ.3 10 PLIP interactions: 6 interactions with chain B, 4 interactions with chain C Hydrophobic interactions: B:L.84, B:I.87, B:F.90, B:F.90, B:F.90, B:A.110, C:P.117 Hydrogen bonds: C:K.118 Water bridges: C:G.119 Salt bridges: C:K.118 BEZ.5: 7 residues within 4Å: Chain A: Y.22, G.36, I.38, P.117, E.123 Chain C: F.90, R.108 5 PLIP interactions: 3 interactions with chain C, 2 interactions with chain A Water bridges: C:N.94, C:R.108 Salt bridges: C:R.108 Hydrophobic interactions: A:I.38, A:P.117

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Manjasetty, B.A. et al., Crystal structure of Homo sapiens protein hp14.5. Proteins (2004)

Release Date

2003-04-08

Peptides

14.5 kDa translational inhibitor protein: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

14.5 kDa translational inhibitor protein

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