- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.65 Å
- Oligo State
- homo-octamer
- Ligands
- 16 x ZN: ZINC ION(Non-covalent)
- 12 x CL: CHLORIDE ION(Non-functional Binders)
CL.3: 5 residues within 4Å:- Chain A: A.88, L.89, K.119, G.385, E.388
Ligand excluded by PLIPCL.4: 3 residues within 4Å:- Chain A: D.167, H.168, D.204
Ligand excluded by PLIPCL.11: 6 residues within 4Å:- Chain B: V.87, A.88, L.89, K.119, G.385, E.388
Ligand excluded by PLIPCL.15: 5 residues within 4Å:- Chain C: A.88, L.89, K.119, G.385, E.388
Ligand excluded by PLIPCL.16: 3 residues within 4Å:- Chain C: D.167, H.168, D.204
Ligand excluded by PLIPCL.23: 6 residues within 4Å:- Chain D: V.87, A.88, L.89, K.119, G.385, E.388
Ligand excluded by PLIPCL.27: 5 residues within 4Å:- Chain E: A.88, L.89, K.119, G.385, E.388
Ligand excluded by PLIPCL.28: 3 residues within 4Å:- Chain E: D.167, H.168, D.204
Ligand excluded by PLIPCL.35: 6 residues within 4Å:- Chain F: V.87, A.88, L.89, K.119, G.385, E.388
Ligand excluded by PLIPCL.39: 5 residues within 4Å:- Chain G: A.88, L.89, K.119, G.385, E.388
Ligand excluded by PLIPCL.40: 3 residues within 4Å:- Chain G: D.167, H.168, D.204
Ligand excluded by PLIPCL.47: 6 residues within 4Å:- Chain H: V.87, A.88, L.89, K.119, G.385, E.388
Ligand excluded by PLIP- 12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.5: 6 residues within 4Å:- Chain A: A.153, L.191, G.192
- Chain B: L.117, A.118, R.121
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:L.191, B:R.121
EDO.6: 6 residues within 4Å:- Chain A: L.117, A.118, R.121
- Chain B: A.153, L.191, G.192
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:L.191, A:R.121
EDO.12: 9 residues within 4Å:- Chain B: W.131, I.159, G.193, K.194, P.195, N.341, L.342, T.343
- Ligands: NA.10
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:G.193, B:T.343
EDO.17: 6 residues within 4Å:- Chain C: A.153, L.191, G.192
- Chain D: L.117, A.118, R.121
2 PLIP interactions:1 interactions with chain C, 1 interactions with chain D- Hydrogen bonds: C:L.191, D:R.121
EDO.18: 6 residues within 4Å:- Chain C: L.117, A.118, R.121
- Chain D: A.153, L.191, G.192
2 PLIP interactions:1 interactions with chain D, 1 interactions with chain C- Hydrogen bonds: D:L.191, C:R.121
EDO.24: 9 residues within 4Å:- Chain D: W.131, I.159, G.193, K.194, P.195, N.341, L.342, T.343
- Ligands: NA.22
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:G.193, D:T.343
EDO.29: 6 residues within 4Å:- Chain E: A.153, L.191, G.192
- Chain F: L.117, A.118, R.121
2 PLIP interactions:1 interactions with chain E, 1 interactions with chain F- Hydrogen bonds: E:L.191, F:R.121
EDO.30: 6 residues within 4Å:- Chain E: L.117, A.118, R.121
- Chain F: A.153, L.191, G.192
2 PLIP interactions:1 interactions with chain E, 1 interactions with chain F- Hydrogen bonds: E:R.121, F:L.191
EDO.36: 9 residues within 4Å:- Chain F: W.131, I.159, G.193, K.194, P.195, N.341, L.342, T.343
- Ligands: NA.34
2 PLIP interactions:2 interactions with chain F- Hydrogen bonds: F:G.193, F:T.343
EDO.41: 6 residues within 4Å:- Chain G: A.153, L.191, G.192
- Chain H: L.117, A.118, R.121
2 PLIP interactions:1 interactions with chain H, 1 interactions with chain G- Hydrogen bonds: H:R.121, G:L.191
EDO.42: 6 residues within 4Å:- Chain G: L.117, A.118, R.121
- Chain H: A.153, L.191, G.192
2 PLIP interactions:1 interactions with chain G, 1 interactions with chain H- Hydrogen bonds: G:R.121, H:L.191
EDO.48: 9 residues within 4Å:- Chain H: W.131, I.159, G.193, K.194, P.195, N.341, L.342, T.343
- Ligands: NA.46
2 PLIP interactions:2 interactions with chain H- Hydrogen bonds: H:G.193, H:T.343
- 4 x MG: MAGNESIUM ION(Non-functional Binders)
MG.9: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.21: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.33: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.45: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)- 4 x NA: SODIUM ION(Non-functional Binders)
NA.10: 2 residues within 4Å:- Chain B: G.193
- Ligands: EDO.12
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:G.193
NA.22: 2 residues within 4Å:- Chain D: G.193
- Ligands: EDO.24
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:G.193
NA.34: 2 residues within 4Å:- Chain F: G.193
- Ligands: EDO.36
1 PLIP interactions:1 interactions with chain F- Hydrogen bonds: F:G.193
NA.46: 2 residues within 4Å:- Chain H: G.193
- Ligands: EDO.48
1 PLIP interactions:1 interactions with chain H- Hydrogen bonds: H:G.193
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Thoden, J.B. et al., High Resolution X-ray Structure of Isoaspartyl Dipeptidase from
Escherichia coli. Biochemistry (2003)
- Release Date
- 2003-05-06
- Peptides
- Isoaspartyl dipeptidase: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
BG
AH
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.65 Å
- Oligo State
- homo-octamer
- Ligands
- 16 x ZN: ZINC ION(Non-covalent)
- 12 x CL: CHLORIDE ION(Non-functional Binders)
- 12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 4 x MG: MAGNESIUM ION(Non-functional Binders)
- 4 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Thoden, J.B. et al., High Resolution X-ray Structure of Isoaspartyl Dipeptidase from
Escherichia coli. Biochemistry (2003)
- Release Date
- 2003-05-06
- Peptides
- Isoaspartyl dipeptidase: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
BG
AH
B