SMTL ID : 1opm.1

OXIDIZED (CU2+) PEPTIDYLGLYCINE ALPHA-HYDROXYLATING MONOOXYGENASE (PHM) WITH BOUND SUBSTRATE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

2 x CU: COPPER (II) ION(Non-covalent)

CU.1: 3 residues within 4Å: Chain A: H.63, H.64, H.128 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.63, A:H.64, A:H.128 CU.3: 3 residues within 4Å: Chain A: H.198, H.200, M.270 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.198, A:H.200, H2O.6

1 x AZI: AZIDE ION(Non-covalent)

AZI.2: 5 residues within 4Å: Chain A: H.191, P.236, D.238 Ligands: NI.4, GOL.7 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.238 Water bridges: A:R.210, A:P.236, A:D.238, A:D.238

1 x NI: NICKEL (II) ION(Non-covalent)

NI.4: 3 residues within 4Å: Chain A: H.191 Ligands: AZI.2, GOL.7 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.191, H2O.6

2 x IYG: N-ALPHA-ACETYL-3,5-DIIODOTYROSYLGLYCINE(Non-covalent)

IYG.5: 12 residues within 4Å: Chain A: L.66, F.68, K.90, A.91, I.93, L.162, M.164, R.196, H.198, M.270, N.272, Y.274 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.162 Hydrogen bonds: A:A.91, A:N.272, A:N.272, A:Y.274, A:Y.274 Salt bridges: A:R.196, A:H.198 IYG.6: 9 residues within 4Å: Chain A: L.13, A.19, D.52, K.54, R.56, R.105, S.146, V.147, H.148 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.13, A:L.13, A:L.13, A:H.148 Hydrogen bonds: A:R.56, A:R.56, A:S.146 Water bridges: A:D.52, A:R.105 Salt bridges: A:K.54, A:R.105 Halogen bonds: A:S.146

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 4 residues within 4Å: Chain A: H.191, D.238 Ligands: AZI.2, NI.4 No protein-ligand interaction detected (PLIP) GOL.8: 7 residues within 4Å: Chain A: F.53, L.94, Y.95, T.104, L.106, F.230, M.276 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.94 Water bridges: A:A.96, A:T.104, A:T.104, A:T.104 GOL.9: 10 residues within 4Å: Chain A: G.69, N.92, L.94, F.112, R.113, V.114, G.119, S.120, S.286, F.287 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.92, A:S.120, A:S.120, A:S.286 Water bridges: A:R.113 GOL.10: 7 residues within 4Å: Chain A: Y.161, Q.184, Y.185, K.186, M.187, M.288, T.289 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.184, A:K.186, A:T.289 GOL.11: 5 residues within 4Å: Chain A: D.17, I.51, T.150, V.152, Q.154 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.17, A:T.150, A:Q.154 Water bridges: A:G.109

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Prigge, S.T. et al., Substrate-mediated electron transfer in peptidylglycine alpha-hydroxylating monooxygenase. Nat.Struct.Biol. (1999)

Release Date

1999-09-29

Peptides

PROTEIN (PEPTIDYLGLYCINE ALPHA-HYDROXYLATING MONOOXYGENASE): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PROTEIN (PEPTIDYLGLYCINE ALPHA-HYDROXYLATING MONOOXYGENASE)

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