SMTL ID : 1opo.2 (4 other biounits)

THE STRUCTURE OF CARNATION MOTTLE VIRUS

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

homo-15-mer

Ligands

15 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: P.163, P.164, T.165, T.166, G.169 Chain B: K.244 Chain D: K.281 4 PLIP interactions: 1 interactions with chain B, 1 interactions with chain D, 2 interactions with chain A Salt bridges: B:K.244, D:K.281 Hydrogen bonds: A:T.165, A:T.166 SO4.2: 5 residues within 4Å: Chain B: P.164, T.165, T.166, G.169 Chain C: K.244 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain C Hydrogen bonds: B:T.165, B:T.166, B:T.166 Salt bridges: C:K.244 SO4.4: 8 residues within 4Å: Chain A: K.244, T.245 Chain C: P.163, P.164, T.165, T.166, G.169 Chain N: K.281 8 PLIP interactions: 5 interactions with chain C, 2 interactions with chain A, 1 interactions with chain N Hydrogen bonds: C:T.165, C:T.165, C:T.165, C:T.166, C:G.169, A:T.245 Salt bridges: A:K.244, N:K.281 SO4.5: 7 residues within 4Å: Chain D: P.163, P.164, T.165, T.166, G.169 Chain E: K.244 Chain G: K.281 4 PLIP interactions: 1 interactions with chain G, 1 interactions with chain E, 2 interactions with chain D Salt bridges: G:K.281, E:K.244 Hydrogen bonds: D:T.165, D:T.166 SO4.6: 5 residues within 4Å: Chain E: P.164, T.165, T.166, G.169 Chain F: K.244 4 PLIP interactions: 1 interactions with chain F, 3 interactions with chain E Salt bridges: F:K.244 Hydrogen bonds: E:T.165, E:T.166, E:T.166 SO4.8: 8 residues within 4Å: Chain B: K.281 Chain D: K.244, T.245 Chain F: P.163, P.164, T.165, T.166, G.169 9 PLIP interactions: 6 interactions with chain F, 1 interactions with chain B, 2 interactions with chain D Hydrogen bonds: F:T.165, F:T.165, F:T.165, F:T.166, F:T.166, F:G.169, D:T.245 Salt bridges: B:K.281, D:K.244 SO4.9: 7 residues within 4Å: Chain G: P.163, P.164, T.165, T.166, G.169 Chain H: K.244 Chain J: K.281 4 PLIP interactions: 1 interactions with chain H, 2 interactions with chain G, 1 interactions with chain J Salt bridges: H:K.244, J:K.281 Hydrogen bonds: G:T.165, G:T.166 SO4.10: 5 residues within 4Å: Chain H: P.164, T.165, T.166, G.169 Chain I: K.244 4 PLIP interactions: 3 interactions with chain H, 1 interactions with chain I Hydrogen bonds: H:T.165, H:T.166, H:T.166 Salt bridges: I:K.244 SO4.12: 8 residues within 4Å: Chain E: K.281 Chain G: K.244, T.245 Chain I: P.163, P.164, T.165, T.166, G.169 9 PLIP interactions: 2 interactions with chain G, 1 interactions with chain E, 6 interactions with chain I Hydrogen bonds: G:T.245, I:T.165, I:T.165, I:T.165, I:T.166, I:T.166, I:G.169 Salt bridges: G:K.244, E:K.281 SO4.13: 7 residues within 4Å: Chain J: P.163, P.164, T.165, T.166, G.169 Chain K: K.244 Chain M: K.281 5 PLIP interactions: 3 interactions with chain J, 1 interactions with chain K, 1 interactions with chain M Hydrogen bonds: J:T.165, J:T.166, J:T.166 Salt bridges: K:K.244, M:K.281 SO4.14: 5 residues within 4Å: Chain K: P.164, T.165, T.166, G.169 Chain L: K.244 4 PLIP interactions: 3 interactions with chain K, 1 interactions with chain L Hydrogen bonds: K:T.165, K:T.166, K:T.166 Salt bridges: L:K.244 SO4.16: 8 residues within 4Å: Chain H: K.281 Chain J: K.244, T.245 Chain L: P.163, P.164, T.165, T.166, G.169 9 PLIP interactions: 2 interactions with chain J, 6 interactions with chain L, 1 interactions with chain H Hydrogen bonds: J:T.245, L:T.165, L:T.165, L:T.165, L:T.166, L:T.166, L:G.169 Salt bridges: J:K.244, H:K.281 SO4.17: 7 residues within 4Å: Chain A: K.281 Chain M: P.163, P.164, T.165, T.166, G.169 Chain N: K.244 5 PLIP interactions: 3 interactions with chain M, 1 interactions with chain A, 1 interactions with chain N Hydrogen bonds: M:T.165, M:T.166, M:T.166 Salt bridges: A:K.281, N:K.244 SO4.18: 5 residues within 4Å: Chain N: P.164, T.165, T.166, G.169 Chain O: K.244 4 PLIP interactions: 3 interactions with chain N, 1 interactions with chain O Hydrogen bonds: N:T.165, N:T.166, N:T.166 Salt bridges: O:K.244 SO4.20: 8 residues within 4Å: Chain K: K.281 Chain M: K.244, T.245 Chain O: P.163, P.164, T.165, T.166, G.169 8 PLIP interactions: 2 interactions with chain M, 5 interactions with chain O, 1 interactions with chain K Hydrogen bonds: M:T.245, O:T.165, O:T.165, O:T.165, O:T.166, O:G.169 Salt bridges: M:K.244, K:K.281

5 x CA: CALCIUM ION(Non-covalent)

CA.3: 4 residues within 4Å: Chain B: D.158, D.161 Chain C: N.128, D.200 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain C Metal complexes: B:D.158, B:D.161, B:D.161, C:D.200, C:D.200 CA.7: 4 residues within 4Å: Chain E: D.158, D.161 Chain F: N.128, D.200 5 PLIP interactions: 3 interactions with chain E, 2 interactions with chain F Metal complexes: E:D.158, E:D.161, E:D.161, F:D.200, F:D.200 CA.11: 4 residues within 4Å: Chain H: D.158, D.161 Chain I: N.128, D.200 5 PLIP interactions: 3 interactions with chain H, 2 interactions with chain I Metal complexes: H:D.158, H:D.161, H:D.161, I:D.200, I:D.200 CA.15: 4 residues within 4Å: Chain K: D.158, D.161 Chain L: N.128, D.200 5 PLIP interactions: 3 interactions with chain K, 2 interactions with chain L Metal complexes: K:D.158, K:D.161, K:D.161, L:D.200, L:D.200 CA.19: 4 residues within 4Å: Chain N: D.158, D.161 Chain O: N.128, D.200 5 PLIP interactions: 2 interactions with chain O, 3 interactions with chain N Metal complexes: O:D.200, O:D.200, N:D.158, N:D.161, N:D.161

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Morgunova, E. et al., The atomic structure of Carnation Mottle Virus capsid protein. Febs Lett. (1994)

Release Date

2003-04-01

Peptides

Coat protein: ABCDEFGHIJKLMNO

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

G
A

H
B

I
C

J
A

K
B

L
C

M
A

N
B

O
C

Coat protein

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