SMTL ID : 1oql.1 (1 other biounit)

Mistletoe Lectin I from Viscum album complexed with galactose

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-2-2-mer

Ligands

4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain B: W.94, N.96, L.228 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:W.94 NAG-NAG.2: 7 residues within 4Å: Chain A: F.214, P.217 Chain B: T.11, V.12, N.44, L.49, N.136 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.44 NAG-NAG.7: 3 residues within 4Å: Chain D: W.94, N.96, L.228 1 PLIP interactions: 1 interactions with chain D Hydrophobic interactions: D:W.94 NAG-NAG.8: 7 residues within 4Å: Chain C: F.214, P.217 Chain D: T.11, V.12, N.44, L.49, N.136 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.44

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 5 residues within 4Å: Chain A: R.90, D.91, N.112, S.114, D.117 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.90, A:R.90, A:D.91 NAG.6: 3 residues within 4Å: Chain B: D.27, F.29, N.61 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:F.29 Hydrogen bonds: B:N.61 NAG.9: 5 residues within 4Å: Chain C: R.90, D.91, N.112, S.114, D.117 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:R.90, C:R.90, C:D.91, C:D.91 NAG.12: 3 residues within 4Å: Chain D: D.27, F.29, N.61 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:F.29 Hydrogen bonds: D:N.61

4 x GAL: beta-D-galactopyranose(Non-covalent)

GAL.4: 10 residues within 4Å: Chain B: D.23, V.24, R.25, D.26, D.27, Q.36, W.38, K.41, N.47, Q.48 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:D.23, B:D.26, B:D.26, B:D.27, B:D.27, B:Q.36, B:K.41, B:K.41, B:N.47, B:Q.48 Water bridges: B:R.25, B:Q.36 GAL.5: 7 residues within 4Å: Chain B: D.235, V.236, A.237, Q.238, I.247, Y.249, N.256 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.235, B:Q.238, B:N.256, B:N.256 GAL.10: 10 residues within 4Å: Chain D: D.23, V.24, R.25, D.26, D.27, Q.36, W.38, K.41, N.47, Q.48 12 PLIP interactions: 12 interactions with chain D Hydrogen bonds: D:D.23, D:D.26, D:D.27, D:D.27, D:D.27, D:Q.36, D:K.41, D:K.41, D:N.47, D:Q.48 Water bridges: D:R.25, D:Q.36 GAL.11: 7 residues within 4Å: Chain D: D.235, V.236, A.237, Q.238, I.247, Y.249, N.256 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:D.235, D:Q.238, D:N.256, D:N.256

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Niwa, H. et al., Crystal structure at 3 A of mistletoe lectin I, a dimeric type-II ribosome-inactivating protein, complexed with galactose. EUR.J.BIOCHEM. (2003)

Release Date

2003-07-01

Peptides

MISTLETOE LECTIN I: AC
MISTLETOE LECTIN I: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

MISTLETOE LECTIN I

MISTLETOE LECTIN I

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