SMTL ID : 1orr.3 (2 other biounits)

Crystal Structure of CDP-Tyvelose 2-Epimerase complexed with NAD and CDP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 27 residues within 4Å: Chain A: G.8, C.10, G.11, F.12, L.13, D.32, N.33, L.34, S.35, R.36, G.57, D.58, I.59, L.80, A.81, G.82, V.84, I.99, S.123, S.124, Y.165, K.169, H.192, S.193, S.194, M.195, Q.206 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:H.192 Hydrogen bonds: A:C.10, A:F.12, A:L.13, A:N.33, A:N.33, A:L.34, A:S.35, A:S.35, A:R.36, A:D.58, A:D.58, A:I.59, A:L.80, A:G.82, A:S.123, A:Y.165, A:K.169, A:M.195 Water bridges: A:G.11, A:G.14, A:Q.200 NAD.3: 29 residues within 4Å: Chain B: G.8, C.10, G.11, F.12, L.13, D.32, N.33, L.34, S.35, R.36, A.39, G.57, D.58, I.59, L.80, A.81, G.82, V.84, I.99, S.123, S.124, T.125, Y.165, K.169, H.192, S.193, S.194, M.195, Q.206 25 PLIP interactions: 25 interactions with chain B Hydrophobic interactions: B:T.125, B:H.192 Hydrogen bonds: B:C.10, B:F.12, B:L.13, B:N.33, B:N.33, B:L.34, B:S.35, B:S.35, B:R.36, B:D.58, B:D.58, B:I.59, B:L.80, B:G.82, B:S.123, B:Y.165, B:K.169, B:M.195, B:Q.206 Water bridges: B:G.11, B:G.14, B:R.36 Salt bridges: B:R.36

2 x CDP: CYTIDINE-5'-DIPHOSPHATE(Non-covalent)

CDP.2: 14 residues within 4Å: Chain A: N.126, K.127, S.194, Y.204, W.208, W.211, F.212, I.229, S.230, Q.235, R.237, L.276, R.299, D.302 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:N.126, A:N.126, A:Y.204, A:S.230, A:Q.235, A:R.237, A:R.299 Water bridges: A:M.86, A:N.126, A:M.195, A:S.230, A:S.230 Salt bridges: A:K.127, A:K.127, A:R.237, A:R.237, A:R.299 pi-Stacking: A:F.212 CDP.4: 15 residues within 4Å: Chain B: N.126, K.127, S.193, S.194, Y.204, W.208, W.211, F.212, I.229, S.230, Q.235, R.237, L.276, R.299, D.302 20 PLIP interactions: 20 interactions with chain B Hydrogen bonds: B:N.126, B:N.126, B:Y.204, B:S.230, B:Q.235, B:R.299 Water bridges: B:G.207, B:G.207, B:W.208, B:T.228, B:T.228, B:T.228, B:S.230, B:R.299 Salt bridges: B:K.127, B:K.127, B:R.237, B:R.237, B:R.299 pi-Stacking: B:F.212

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Koropatkin, N.M. et al., High Resolution X-ray Structure of Tyvelose Epimerase from Salmonella typhi. J.Biol.Chem. (2003)

Release Date

2003-08-26

Peptides

CDP-tyvelose-2-epimerase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

CDP-tyvelose-2-epimerase

Related Entries With Identical Sequence