- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.45 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x SO4: SULFATE ION(Non-functional Binders)
- 6 x HEC: HEME C(Covalent)
HEC.4: 17 residues within 4Å:- Chain A: A.1, D.2, D.3, I.4, F.15, H.17, H.20, Q.21, V.24, C.27, C.30, H.31
- Chain B: I.38, E.39
- Ligands: HEC.5, DXC.7, DXC.14
16 PLIP interactions:13 interactions with chain A, 3 interactions with chain B,- Hydrophobic interactions: A:I.4, A:F.15, A:Q.21, A:V.24, B:I.38, B:E.39, B:E.39
- Hydrogen bonds: A:D.3, A:I.4, A:F.15
- Water bridges: A:A.1, A:A.1, A:A.1
- Salt bridges: A:H.17
- Metal complexes: A:H.17, A:H.31
HEC.5: 21 residues within 4Å:- Chain A: V.13, K.14, F.15, P.16, A.19, H.20, A.23, V.24, K.29, F.41, K.49, G.50, C.51, C.54, H.55, M.58, K.60, G.61, P.62
- Ligands: HEC.4, DXC.7
15 PLIP interactions:15 interactions with chain A,- Hydrophobic interactions: A:V.13, A:F.15, A:P.16, A:V.24, A:V.24, A:K.29, A:F.41, A:K.60, A:P.62
- Water bridges: A:A.19, A:K.60, A:G.61
- Salt bridges: A:K.60
- Metal complexes: A:H.20, A:H.55
HEC.6: 21 residues within 4Å:- Chain A: L.6, A.8, K.9, N.10, V.13, F.41, G.42, K.43, A.46, H.47, C.51, K.52, H.55, P.62, T.63, K.64, C.65, C.68, H.69
- Chain B: A.1, D.2
16 PLIP interactions:13 interactions with chain A, 3 interactions with chain B,- Hydrophobic interactions: A:L.6, A:A.8, A:V.13, A:V.13, A:K.43, A:A.46, A:K.52
- Hydrogen bonds: A:K.9, B:D.2
- Water bridges: A:K.43, B:D.2, B:D.2
- Salt bridges: A:K.9
- pi-Cation interactions: A:K.43
- Metal complexes: A:H.47, A:H.69
HEC.11: 17 residues within 4Å:- Chain A: I.38, E.39
- Chain B: A.1, D.2, D.3, I.4, F.15, H.17, H.20, Q.21, V.24, C.27, C.30, H.31
- Ligands: DXC.7, HEC.12, DXC.14
14 PLIP interactions:11 interactions with chain B, 3 interactions with chain A,- Hydrophobic interactions: B:I.4, B:F.15, B:Q.21, B:V.24, A:I.38, A:E.39, A:E.39
- Hydrogen bonds: B:A.1, B:I.4, B:F.15
- Water bridges: B:A.1
- Salt bridges: B:H.17
- Metal complexes: B:H.17, B:H.31
HEC.12: 21 residues within 4Å:- Chain B: V.13, K.14, F.15, P.16, A.19, H.20, A.23, V.24, K.29, F.41, K.49, G.50, C.51, C.54, H.55, M.58, K.60, G.61, P.62
- Ligands: HEC.11, DXC.14
15 PLIP interactions:15 interactions with chain B,- Hydrophobic interactions: B:V.13, B:F.15, B:P.16, B:V.24, B:V.24, B:K.29, B:F.41, B:K.60, B:P.62
- Water bridges: B:A.19, B:K.60, B:G.61
- Salt bridges: B:K.60
- Metal complexes: B:H.20, B:H.55
HEC.13: 21 residues within 4Å:- Chain A: A.1, D.2
- Chain B: L.6, A.8, K.9, N.10, V.13, F.41, G.42, K.43, A.46, H.47, C.51, K.52, H.55, P.62, T.63, K.64, C.65, C.68, H.69
16 PLIP interactions:13 interactions with chain B, 3 interactions with chain A,- Hydrophobic interactions: B:L.6, B:A.8, B:V.13, B:V.13, B:K.43, B:A.46, B:K.52
- Hydrogen bonds: B:K.9, A:D.2, A:D.2
- Water bridges: B:K.43, A:D.2
- Salt bridges: B:K.9
- pi-Cation interactions: B:K.43
- Metal complexes: B:H.47, B:H.69
- 2 x DXC: (3ALPHA,5BETA,12ALPHA)-3,12-DIHYDROXYCHOLAN-24-OIC ACID(Non-covalent)
DXC.7: 16 residues within 4Å:- Chain A: I.4, L.6, K.29, C.30, K.33, K.37, I.38, F.41, M.45, K.49, G.50
- Chain B: I.38
- Ligands: HEC.4, HEC.5, HEC.11, DXC.14
14 PLIP interactions:13 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:I.4, A:L.6, A:K.33, A:K.37, A:F.41, A:F.41, A:F.41, B:I.38
- Water bridges: A:K.33, A:K.37, A:F.41
- Salt bridges: A:K.33, A:K.37, A:K.49
DXC.14: 16 residues within 4Å:- Chain A: I.38
- Chain B: I.4, L.6, K.29, C.30, K.33, K.37, I.38, F.41, M.45, K.49, G.50
- Ligands: HEC.4, DXC.7, HEC.11, HEC.12
14 PLIP interactions:1 interactions with chain A, 13 interactions with chain B- Hydrophobic interactions: A:I.38, B:I.4, B:L.6, B:K.33, B:K.37, B:F.41, B:F.41, B:F.41
- Water bridges: B:K.33, B:K.37, B:F.41
- Salt bridges: B:K.33, B:K.37, B:K.49
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Pokkuluri, P.R. et al., Family of cytochrome c7-type proteins from Geobacter sulfurreducens: structure of one cytochrome c7 at 1.45 A resolution. Biochemistry (2004)
- Release Date
- 2004-02-03
- Peptides
- PpcA: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.45 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x SO4: SULFATE ION(Non-functional Binders)
- 6 x HEC: HEME C(Covalent)
- 2 x DXC: (3ALPHA,5BETA,12ALPHA)-3,12-DIHYDROXYCHOLAN-24-OIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Pokkuluri, P.R. et al., Family of cytochrome c7-type proteins from Geobacter sulfurreducens: structure of one cytochrome c7 at 1.45 A resolution. Biochemistry (2004)
- Release Date
- 2004-02-03
- Peptides
- PpcA: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A