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SMTL ID : 1ow2.1
STRUCTURE AND MECHANISM OF ACTION OF ISOPENTENYLPYROPHOSPHATE-DIMETHYLALLYLPYROPHOSPHATE ISOMERASE: COMPLEX OF C67A MUTANT WITH EIPP
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.00 Å
Oligo State
homo-dimer
Ligands
2 x
MN
:
MANGANESE (II) ION
(Non-covalent)
MN.1:
5 residues within 4Å:
Chain A:
H.25
,
H.32
,
H.69
,
E.114
,
E.116
5
PLIP interactions
:
5 interactions with chain A
Metal complexes:
A:H.25
,
A:H.32
,
A:H.69
,
A:E.114
,
A:E.116
MN.4:
5 residues within 4Å:
Chain B:
H.25
,
H.32
,
H.69
,
E.114
,
E.116
5
PLIP interactions
:
5 interactions with chain B
Metal complexes:
B:H.25
,
B:H.32
,
B:H.69
,
B:E.114
,
B:E.116
2 x
MG
:
MAGNESIUM ION
(Non-covalent)
MG.2:
3 residues within 4Å:
Chain A:
A.67
,
E.87
Ligands:
EIP.3
4
PLIP interactions
:
2 interactions with chain A
,
2 Ligand-Water interactions
Metal complexes:
A:A.67
,
A:E.87
,
H
2
O.3
,
H
2
O.3
MG.5:
4 residues within 4Å:
Chain B:
A.67
,
G.68
,
E.87
Ligands:
EIP.6
4
PLIP interactions
:
2 interactions with chain B
,
2 Ligand-Water interactions
Metal complexes:
B:A.67
,
B:E.87
,
H
2
O.3
,
H
2
O.3
2 x
EIP
:
4-HYDROXY-3-METHYL BUTYL DIPHOSPHATE
(Covalent)
EIP.3:
14 residues within 4Å:
Chain A:
K.21
,
F.35
,
R.51
,
K.55
,
A.67
,
G.68
,
H.69
,
R.83
,
E.87
,
E.114
,
E.116
,
C.118
,
W.161
Ligands:
MG.2
17
PLIP interactions
:
17 interactions with chain A
Hydrophobic interactions:
A:A.67
,
A:W.161
Hydrogen bonds:
A:H.69
Water bridges:
A:K.21
,
A:R.51
,
A:R.51
,
A:R.51
,
A:A.67
,
A:A.67
,
A:E.135
Salt bridges:
A:K.21
,
A:R.51
,
A:K.55
,
A:K.55
,
A:H.69
,
A:H.69
,
A:R.83
EIP.6:
15 residues within 4Å:
Chain B:
K.21
,
A.34
,
F.35
,
R.51
,
K.55
,
A.67
,
G.68
,
H.69
,
R.83
,
E.87
,
E.114
,
E.116
,
C.118
,
E.135
Ligands:
MG.5
22
PLIP interactions
:
22 interactions with chain B
Hydrophobic interactions:
B:A.34
,
B:A.67
,
B:E.116
Hydrogen bonds:
B:H.69
Water bridges:
B:E.4
,
B:E.4
,
B:K.21
,
B:R.51
,
B:R.51
,
B:R.51
,
B:R.51
,
B:K.55
,
B:A.67
,
B:E.135
,
B:E.135
Salt bridges:
B:K.21
,
B:R.51
,
B:K.55
,
B:K.55
,
B:H.69
,
B:H.69
,
B:R.83
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Wouters, J. et al., Crystal structure of the C67A mutant of isopentenyl diphosphate isomerase complexed with a mechanism-based irreversible inhibitor. Proteins (2004)
Release Date
2004-01-20
Peptides
ISOPENTENYL-DIPHOSPHATE DELTA-ISOMERASE:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
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Secondary Structure
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ISOPENTENYL-DIPHOSPHATE DELTA-ISOMERASE
Related Entries With Identical Sequence
1q54.1
Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog
Background
Transparent
Resolution
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