- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-hexamer
- Ligands
- 18 x SO4: SULFATE ION(Non-functional Binders)
- 6 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
NAD.5: 18 residues within 4Å:- Chain A: T.107, T.109, L.110, H.111, T.112, M.113, I.114, H.115, Y.146, D.148, I.160, F.163, R.164, K.168, N.190
- Chain C: Q.183, T.205, C.207
15 PLIP interactions:15 interactions with chain A- Hydrophobic interactions: A:I.160, A:I.160, A:F.163
- Hydrogen bonds: A:T.112, A:T.112, A:M.113, A:H.115, A:D.148, A:N.190, A:N.190
- Salt bridges: A:H.111, A:R.164, A:K.168, A:K.168
- pi-Stacking: A:H.111
NAD.8: 17 residues within 4Å:- Chain B: T.107, T.109, L.110, H.111, T.112, M.113, I.114, H.115, Y.146, I.160, F.163, R.164, K.168, N.190
- Chain F: Q.183, T.205, C.207
16 PLIP interactions:14 interactions with chain B, 2 interactions with chain F- Hydrophobic interactions: B:F.163
- Hydrogen bonds: B:T.112, B:M.113, B:H.115, B:Y.146, B:Y.146, B:N.190, F:Q.183
- Water bridges: B:E.116, B:E.159, F:I.181
- Salt bridges: B:H.111, B:R.164, B:K.168, B:K.168
- pi-Stacking: B:H.111
NAD.13: 18 residues within 4Å:- Chain C: T.107, T.109, L.110, H.111, T.112, M.113, I.114, H.115, Y.146, D.148, I.160, F.163, R.164, K.168, N.190
- Chain E: Q.183, T.205, C.207
15 PLIP interactions:15 interactions with chain C- Hydrophobic interactions: C:I.160, C:I.160, C:F.163
- Hydrogen bonds: C:T.112, C:T.112, C:M.113, C:H.115, C:D.148, C:N.190, C:N.190
- Salt bridges: C:H.111, C:R.164, C:K.168, C:K.168
- pi-Stacking: C:H.111
NAD.16: 17 residues within 4Å:- Chain B: Q.183, T.205, C.207
- Chain D: T.107, T.109, L.110, H.111, T.112, M.113, I.114, H.115, Y.146, I.160, F.163, R.164, K.168, N.190
16 PLIP interactions:14 interactions with chain D, 2 interactions with chain B- Hydrophobic interactions: D:F.163
- Hydrogen bonds: D:T.112, D:M.113, D:H.115, D:Y.146, D:Y.146, D:N.190, B:Q.183
- Water bridges: D:E.116, D:E.159, B:I.181
- Salt bridges: D:H.111, D:R.164, D:K.168, D:K.168
- pi-Stacking: D:H.111
NAD.21: 18 residues within 4Å:- Chain A: Q.183, T.205, C.207
- Chain E: T.107, T.109, L.110, H.111, T.112, M.113, I.114, H.115, Y.146, D.148, I.160, F.163, R.164, K.168, N.190
15 PLIP interactions:15 interactions with chain E- Hydrophobic interactions: E:I.160, E:I.160, E:F.163
- Hydrogen bonds: E:T.112, E:T.112, E:M.113, E:H.115, E:D.148, E:N.190, E:N.190
- Salt bridges: E:H.111, E:R.164, E:K.168, E:K.168
- pi-Stacking: E:H.111
NAD.24: 17 residues within 4Å:- Chain D: Q.183, T.205, C.207
- Chain F: T.107, T.109, L.110, H.111, T.112, M.113, I.114, H.115, Y.146, I.160, F.163, R.164, K.168, N.190
16 PLIP interactions:2 interactions with chain D, 14 interactions with chain F- Hydrogen bonds: D:Q.183, F:T.112, F:M.113, F:H.115, F:Y.146, F:Y.146, F:N.190
- Water bridges: D:I.181, F:E.116, F:E.159
- Hydrophobic interactions: F:F.163
- Salt bridges: F:H.111, F:R.164, F:K.168, F:K.168
- pi-Stacking: F:H.111
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Stokell, D.J. et al., Probing the roles of key residues in the unique regulatory NADH binding site of type II citrate synthase of Escherichia coli. J.Biol.Chem. (2003)
- Release Date
- 2004-05-18
- Peptides
- Citrate synthase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-hexamer
- Ligands
- 18 x SO4: SULFATE ION(Non-functional Binders)
- 6 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Stokell, D.J. et al., Probing the roles of key residues in the unique regulatory NADH binding site of type II citrate synthase of Escherichia coli. J.Biol.Chem. (2003)
- Release Date
- 2004-05-18
- Peptides
- Citrate synthase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
B