SMTL ID : 1owh.1

Substituted 2-Naphthamidine Inhibitors of Urokinase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.61 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 1 residues within 4Å: Chain A: K.53 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.53 SO4.2: 9 residues within 4Å: Chain A: V.30, C.31, H.46, C.47, Q.195, G.196, D.197, S.198 Ligands: 239.4 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.196, A:S.198, A:S.198 Water bridges: A:Q.195, A:Q.195 Salt bridges: A:H.46 SO4.3: 3 residues within 4Å: Chain A: Y.126, R.233, H.236 3 PLIP interactions: 3 interactions with chain A Water bridges: A:Y.126 Salt bridges: A:R.233, A:H.236

1 x 239: 6-[(Z)-AMINO(IMINO)METHYL]-N-[4-(AMINOMETHYL)PHENYL]-2-NAPHTHAMIDE(Non-covalent)

239.4: 15 residues within 4Å: Chain A: H.46, D.50, H.94, D.192, S.193, C.194, Q.195, S.198, V.216, W.218, G.219, G.221, C.222, G.229 Ligands: SO4.2 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:H.46, A:Q.195, A:V.216 Hydrogen bonds: A:H.46, A:D.50, A:D.192, A:S.193, A:Q.195, A:G.221 Water bridges: A:D.192, A:V.230

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wendt, M.D. et al., Identification of Novel Binding Interactions in the Development of Potent, Selective 2-Naphthamidine Inhibitors of Urokinase. Synthesis, Structural Analysis, and SAR of N-Phenyl Amide 6-Substitution. J.Med.Chem. (2004)

Release Date

2003-09-30

Peptides

Urokinase-type plasminogen activator: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Urokinase-type plasminogen activator

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