SMTL ID : 1oxk.7 (6 other biounits)

Complex between YPD1 and SLN1 response regulator domain in space group P3(2)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-4-4-mer

Ligands

12 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: H.63, K.66, Q.85, R.89 Chain B: Q.60 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.85 Salt bridges: A:H.63, A:K.66, A:R.89 SO4.2: 3 residues within 4Å: Chain A: P.4, S.5 Chain H: T.118 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.5 SO4.3: 3 residues within 4Å: Chain A: Q.33, Q.37 Chain B: H.11 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:Q.33, A:Q.37 Water bridges: B:H.11 Salt bridges: B:H.11 SO4.4: 4 residues within 4Å: Chain C: H.63, K.66, Q.85, R.89 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:Q.85 Salt bridges: C:H.63, C:K.66, C:R.89 SO4.5: 6 residues within 4Å: Chain C: P.4, S.5, E.6 Chain F: K.71, R.75, E.100 3 PLIP interactions: 2 interactions with chain F, 1 interactions with chain C Salt bridges: F:K.71, F:R.75 Hydrogen bonds: C:S.5 SO4.6: 4 residues within 4Å: Chain C: Q.33, Q.37, F.64 Chain D: H.11 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain D Hydrogen bonds: C:Q.33, C:Q.37 Salt bridges: D:H.11 SO4.7: 4 residues within 4Å: Chain E: H.63, K.66, Q.85, R.89 4 PLIP interactions: 4 interactions with chain E Hydrogen bonds: E:Q.85 Salt bridges: E:H.63, E:K.66, E:R.89 SO4.8: 5 residues within 4Å: Chain E: P.4, S.5, E.6 Chain H: K.71, R.75 5 PLIP interactions: 2 interactions with chain E, 3 interactions with chain H Hydrogen bonds: E:S.5, E:E.6, H:E.100 Salt bridges: H:K.71, H:R.75 SO4.9: 4 residues within 4Å: Chain E: Q.33, Q.37, F.64 Chain F: H.11 3 PLIP interactions: 2 interactions with chain E, 1 interactions with chain F Hydrogen bonds: E:Q.33, E:Q.37 Salt bridges: F:H.11 SO4.10: 4 residues within 4Å: Chain G: H.63, K.66, Q.85, R.89 5 PLIP interactions: 5 interactions with chain G Hydrogen bonds: G:Q.85, G:Q.85 Salt bridges: G:H.63, G:K.66, G:R.89 SO4.11: 6 residues within 4Å: Chain B: T.118 Chain D: K.71, R.75 Chain G: P.4, S.5, E.6 5 PLIP interactions: 3 interactions with chain G, 2 interactions with chain D Hydrogen bonds: G:S.5, G:E.6, G:E.6 Salt bridges: D:K.71, D:R.75 SO4.12: 4 residues within 4Å: Chain G: Q.33, Q.37, F.64 Chain H: H.11 5 PLIP interactions: 2 interactions with chain H, 3 interactions with chain G Water bridges: H:H.11, G:Q.37 Salt bridges: H:H.11 Hydrogen bonds: G:Q.33, G:Q.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, Q. et al., The Yeast YPD1/SLN1 Complex. Insights into Molecular Recognition in Two-Component Signaling Systems. Structure (2003)

Release Date

2003-12-16

Peptides

Ypd1p: ACEG
SLN1: BDFH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
I

C
A

E
C

G
E

B
J

D
B

F
D

H
F

Ypd1p

SLN1

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