SMTL ID : 1oyf.1

Crystal Structure of Russelles viper (Daboia russellii pulchella) phospholipase A2 in a complex with venom 6-methyl heptanol

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

hetero-1-1-mer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: N.58, P.59, Q.60, S.61 6 PLIP interactions: 1 interactions with chain B, 5 interactions with chain A Water bridges: B:E.118, A:S.61 Hydrogen bonds: A:N.58, A:Q.60, A:Q.60, A:S.61

2 x MHN: 6-METHYLHEPTAN-1-OL(Non-covalent)

MHN.2: 9 residues within 4Å: Chain A: F.5, A.17, S.22, Y.27, G.29, W.30, C.44, H.47, D.48 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.5, A:A.17 Hydrogen bonds: A:C.44 MHN.4: 7 residues within 4Å: Chain B: L.2, F.5, A.17, Y.21, C.44, H.47, D.48 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:L.2, B:F.5, B:A.17 Hydrogen bonds: B:C.44, B:D.48

1 x ACY: ACETIC ACID(Non-functional Binders)

ACY.3: 4 residues within 4Å: Chain A: A.39, R.42, N.99, T.102 2 PLIP interactions: 2 interactions with chain A Water bridges: A:A.39 Salt bridges: A:R.42

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Singh, N. et al., Crystal Structure of Russelles viper (Daboia russellii pulchella) phospholipase A2 in a complex with venom 6-methyl heptanol. To be Published

Release Date

2003-05-20

Peptides

Phospholipase A2: A
Phospholipase A2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Phospholipase A2

Phospholipase A2