SMTL ID : 1oyg.1

Crystal structure of Bacillus subtilis levansucrase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.215, Q.246, L.282, N.284, D.313 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.215, A:L.282, A:D.313, A:D.313, H2O.1

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: D.124, A.125, N.126 Ligands: EDO.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.125, A:N.126 EDO.3: 2 residues within 4Å: Chain A: N.126 Ligands: EDO.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.126 EDO.4: 10 residues within 4Å: Chain A: H.78, Q.100, G.103, E.104, T.105, Q.442, L.443, T.444, N.446, K.447 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:H.78, A:G.103, A:L.443, A:T.444, A:T.444 Water bridges: A:Q.100 EDO.5: 6 residues within 4Å: Chain A: N.216, H.217, T.218, R.220, E.314, K.337 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.216, A:H.217, A:R.220, A:R.220, A:K.337 EDO.6: 5 residues within 4Å: Chain A: N.424, K.426, K.429, T.430, S.431 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.431 EDO.7: 2 residues within 4Å: Chain A: Q.203, I.206 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.203 EDO.8: 3 residues within 4Å: Chain A: I.191, T.297, L.298 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.298 Water bridges: A:I.191

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Meng, G. et al., Structural framework of fructosyl transfer in Bacillus subtilis levansucrase. Nat.Struct.Biol. (2003)

Release Date

2003-10-14

Peptides

levansucrase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

levansucrase