SMTL ID : 1oyj.2 (1 other biounit)

Crystal structure solution of Rice GST1 (OsGSTU1) in complex with glutathione.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-dimer

Ligands

1 x MG: MAGNESIUM ION(Non-functional Binders)

MG.1: 1 residues within 4Å: Ligands: GSH.9 No protein-ligand interaction detected (PLIP)

10 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: E.3, F.80, P.81, G.82 Ligand excluded by PLIP CL.3: 2 residues within 4Å: Chain A: K.114 Ligands: GSH.9 Ligand excluded by PLIP CL.4: 2 residues within 4Å: Chain A: I.204, D.205 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain A: R.113 Chain B: K.55 Ligands: GSH.19 Ligand excluded by PLIP CL.6: 6 residues within 4Å: Chain A: V.66, S.67, V.71 Chain B: A.102, F.106 Ligands: GOL.14 Ligand excluded by PLIP CL.7: 1 residues within 4Å: Chain A: R.135 Ligand excluded by PLIP CL.15: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.16: 3 residues within 4Å: Chain B: P.212, S.213, K.216 Ligand excluded by PLIP CL.17: 5 residues within 4Å: Chain B: R.151, E.152, F.153, G.157, G.158 Ligand excluded by PLIP CL.18: 2 residues within 4Å: Chain B: I.204, D.205 Ligand excluded by PLIP

4 x GSH: GLUTATHIONE(Non-covalent)

GSH.8: 11 residues within 4Å: Chain A: S.15, F.17, L.39, K.42, R.54, K.55, I.56, P.57, E.68, S.69 Chain B: R.113 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.17 Hydrogen bonds: A:I.56, A:I.56, A:E.68, A:S.69 Water bridges: A:R.54, A:K.55, A:E.68, A:L.70, A:D.112, A:D.112 Salt bridges: A:K.42 GSH.9: 8 residues within 4Å: Chain A: R.113, K.114, C.118, R.121, E.136, I.140 Ligands: MG.1, CL.3 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.114 Water bridges: A:E.136, A:E.136 Salt bridges: A:K.114, A:K.114 GSH.10: 7 residues within 4Å: Chain A: L.122, Q.130, R.181, C.182, G.183, G.184, Y.218 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.130, A:Q.130, A:R.181 GSH.19: 11 residues within 4Å: Chain A: R.113 Chain B: S.15, F.17, L.39, K.42, K.55, I.56, P.57, E.68, S.69 Ligands: CL.5 11 PLIP interactions: 10 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:F.17, B:K.55 Hydrogen bonds: B:I.56, B:I.56, B:E.68, B:S.69 Water bridges: B:I.56, B:E.68, B:L.70, A:R.113 Salt bridges: B:K.42

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.11: 1 residues within 4Å: Chain A: P.129 No protein-ligand interaction detected (PLIP) GOL.12: 8 residues within 4Å: Chain A: T.173, A.174, A.198, G.202, L.211, P.212, S.213, P.214 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.173, A:T.173, A:A.198, A:P.212 GOL.13: 2 residues within 4Å: Chain A: W.13, K.216 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.216 GOL.14: 5 residues within 4Å: Chain A: S.49, P.65, S.67 Chain B: F.106 Ligands: CL.6 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:P.65 GOL.20: 4 residues within 4Å: Chain B: E.31, F.32, K.209, H.210 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:F.32, B:F.32, B:K.209 GOL.21: 6 residues within 4Å: Chain A: F.106, W.107 Chain B: S.49, N.50, P.65, S.67 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Water bridges: A:W.107 Hydrogen bonds: B:S.67

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dixon, D.P. et al., Forced evolution of a herbicide detoxifying glutathione transferase. J.Biol.Chem. (2003)

Release Date

2003-07-01

Peptides

glutathione s-transferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

glutathione s-transferase

Related Entries With Identical Sequence