SMTL ID : 1ozn.1

1.5A Crystal Structure of the Nogo Receptor Ligand Binding Domain Reveals a Convergent Recognition Scaffold Mediating Inhibition of Myelination

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.52 Å

Oligo State

monomer

Ligands

1 x NAG- NDG- MAN- MAN: alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NDG-MAN-MAN.1: 4 residues within 4Å: Chain A: A.32, A.33, R.56, N.57 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.57

1 x NAG- NDG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NDG-BMA.2: 3 residues within 4Å: Chain A: A.129, A.130, N.154 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:A.129, A:A.130 Hydrogen bonds: A:N.154

3 x ACY: ACETIC ACID(Non-functional Binders)

ACY.3: 3 residues within 4Å: Chain A: P.265, R.267, Q.282 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:P.265 Hydrogen bonds: A:Q.282 Water bridges: A:Q.282 Salt bridges: A:R.267 ACY.4: 3 residues within 4Å: Chain A: L.23, Q.24, A.25 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.23 Hydrogen bonds: A:Q.24, A:A.25, A:A.25 ACY.5: 3 residues within 4Å: Chain A: R.244, G.283, C.284 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.244 Water bridges: A:G.283

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

He, X.L. et al., Structure of the Nogo Receptor Ectodomain. A Recognition module implicated in Myelin Inhibition. Neuron (2003)

Release Date

2003-05-20

Peptides

Reticulon 4 receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Reticulon 4 receptor