SMTL ID : 1ozv.1 (3 other biounits)

Crystal structure of the SET domain of LSMT bound to Lysine and AdoHcy

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

monomer

Ligands

3 x LYS: LYSINE(Non-covalent)(Non-functional Binders)

LYS.1: 12 residues within 4Å: Chain A: S.177, R.178, A.179, F.180, S.181, R.182, D.195, I.197, Y.210, Y.243, Y.256 Ligands: SAH.4 12 PLIP interactions: 12 interactions with chain A, Hydrophobic interactions: A:F.180, A:F.180, A:Y.243, A:Y.243 Hydrogen bonds: A:S.181, A:R.182, A:I.197, A:Y.210, A:Y.243, A:Y.256 Water bridges: A:K.247 Salt bridges: A:R.182 LYS.2: 0 residues within 4Å: (No contacts) 2 PLIP interactions: 2 Ligand-Ligand interactions Hydrogen bonds: K.2, K.2 LYS.3: 0 residues within 4Å: (No contacts) 2 PLIP interactions: 2 Ligand-Ligand interactions Hydrogen bonds: K.3, K.3

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.4: 16 residues within 4Å: Chain A: E.36, G.37, L.38, P.107, S.177, R.178, D.195, L.196, I.197, N.198, H.199, Y.243, Y.256, G.257, F.258 Ligands: LYS.1 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:L.38, A:L.38, A:L.38, A:S.177, A:S.177, A:N.198, A:H.199, A:H.199, A:Y.243, A:G.257 Water bridges: A:E.36 Salt bridges: A:R.178 pi-Stacking: A:F.258

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Trievel, R.C. et al., Mechanism of multiple lysine methylation by the SET domain enzyme Rubisco LSMT. Nat.Struct.Biol. (2003)

Release Date

2003-07-01

Peptides

Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast

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