SMTL ID : 1p0f.1

Crystal Structure of the Binary Complex: NADP(H)-Dependent Vertebrate Alcohol Dehydrogenase (ADH8) with the cofactor NADP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: C.47, S.49, H.68, C.174 Ligands: NAP.3, GOL.4 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.47, A:H.68, A:C.174 ZN.2: 5 residues within 4Å: Chain A: C.98, G.99, C.101, C.104, C.112 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.98, A:C.101, A:C.104, A:C.112 ZN.5: 5 residues within 4Å: Chain B: C.47, H.68, C.174 Ligands: NAP.7, GOL.8 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.47, B:H.68, B:C.174 ZN.6: 5 residues within 4Å: Chain B: C.98, G.99, C.101, C.104, C.112 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.98, B:C.101, B:C.104, B:C.112

2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.3: 28 residues within 4Å: Chain A: C.47, G.48, S.49, C.174, T.178, G.199, L.200, G.201, G.202, V.203, G.223, T.224, H.225, K.228, C.268, A.269, G.270, R.271, L.292, G.293, L.294, S.317, V.318, F.319, L.361, R.368 Ligands: ZN.1, GOL.4 29 PLIP interactions: 29 interactions with chain A Hydrophobic interactions: A:T.178, A:V.203 Hydrogen bonds: A:G.48, A:L.200, A:G.202, A:V.203, A:T.224, A:T.224, A:A.269, A:R.271, A:L.292, A:L.294, A:F.319, A:R.368 Water bridges: A:S.52, A:S.52, A:S.52, A:G.201, A:G.204, A:H.225, A:H.225, A:K.228, A:K.228, A:K.228, A:G.320, A:G.320 Salt bridges: A:H.225, A:K.228, A:R.368 NAP.7: 28 residues within 4Å: Chain B: C.47, G.48, S.49, C.174, T.178, G.199, L.200, G.201, G.202, V.203, G.223, T.224, H.225, K.228, C.268, A.269, G.270, R.271, L.292, G.293, L.294, S.317, V.318, F.319, L.361, R.368 Ligands: ZN.5, GOL.8 25 PLIP interactions: 25 interactions with chain B Hydrophobic interactions: B:T.178 Hydrogen bonds: B:G.48, B:T.178, B:L.200, B:G.202, B:V.203, B:T.224, B:A.269, B:R.271, B:L.292, B:L.294, B:F.319, B:R.368 Water bridges: B:S.52, B:S.52, B:G.201, B:G.204, B:H.225, B:H.225, B:K.228, B:K.228, B:G.320 Salt bridges: B:H.225, B:K.228, B:R.368

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 10 residues within 4Å: Chain A: S.49, I.58, H.68, M.117, K.120, M.142, C.174, L.294 Ligands: ZN.1, NAP.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.49, A:K.120, A:K.120 GOL.8: 10 residues within 4Å: Chain B: S.49, I.58, H.68, F.94, M.117, M.142, C.174, L.294 Ligands: ZN.5, NAP.7 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.49

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rosell, A. et al., Crystal structure of the vertebrate NADP(H)-dependent alcohol dehydrogenase (ADH8). J.Mol.Biol. (2003)

Release Date

2003-04-22

Peptides

NADP-dependent ALCOHOL DEHYDROGENASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

NADP-dependent ALCOHOL DEHYDROGENASE

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