SMTL ID : 1p1i.1

Crystal structure of the NAD+-bound 1L-myo-inositol 1-phosphate synthase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-tetramer

Ligands

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 28 residues within 4Å: Chain A: I.71, G.72, G.74, G.75, N.76, N.77, D.148, I.149, S.184, I.185, R.198, W.243, T.244, A.245, N.246, T.247, P.277, G.295, S.296, P.297, D.320, L.321, N.354, N.355, D.356, D.438, S.439, A.442 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:L.321 Hydrogen bonds: A:G.74, A:G.74, A:N.76, A:N.77, A:N.77, A:I.149, A:S.184, A:I.185, A:R.198, A:R.198, A:N.246, A:N.246, A:T.247, A:T.247, A:T.247, A:N.354, A:D.356, A:S.439 Water bridges: A:G.75, A:S.439, A:S.439 NAD.2: 25 residues within 4Å: Chain B: I.71, G.72, G.74, G.75, N.76, N.77, D.148, I.149, S.184, I.185, I.191, R.198, T.244, A.245, N.246, T.247, G.295, S.296, P.297, D.320, L.321, D.438, S.439, A.442, K.489 20 PLIP interactions: 20 interactions with chain B Hydrophobic interactions: B:L.321 Hydrogen bonds: B:G.74, B:N.76, B:N.77, B:N.77, B:I.149, B:S.184, B:I.185, B:R.198, B:R.198, B:T.244, B:N.246, B:N.246, B:T.247, B:T.247, B:T.247 Water bridges: B:G.75, B:G.78, B:Y.187, B:R.198 NAD.3: 28 residues within 4Å: Chain C: I.71, G.72, G.74, G.75, N.76, N.77, D.148, I.149, S.184, I.185, R.198, W.243, T.244, A.245, N.246, T.247, P.277, G.295, S.296, P.297, D.320, L.321, N.354, N.355, D.356, D.438, S.439, A.442 21 PLIP interactions: 21 interactions with chain C Hydrophobic interactions: C:L.321 Hydrogen bonds: C:G.74, C:G.74, C:N.76, C:N.77, C:N.77, C:I.149, C:S.184, C:I.185, C:R.198, C:R.198, C:T.244, C:N.246, C:N.246, C:T.247, C:T.247, C:N.354, C:S.439 Water bridges: C:G.75, C:S.439, C:S.439 NAD.4: 25 residues within 4Å: Chain D: I.71, G.72, G.74, G.75, N.76, N.77, D.148, I.149, S.184, I.185, I.191, R.198, T.244, A.245, N.246, T.247, G.295, S.296, P.297, D.320, L.321, D.438, S.439, A.442, K.489 18 PLIP interactions: 18 interactions with chain D Hydrophobic interactions: D:L.321 Hydrogen bonds: D:G.74, D:N.76, D:N.77, D:N.77, D:I.149, D:S.184, D:I.185, D:R.198, D:R.198, D:N.246, D:N.246, D:T.247, D:T.247 Water bridges: D:G.75, D:G.78, D:Y.187, D:R.198

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jin, X. et al., Structures of NAD(+)- and NADH-bound 1-l-myo-inositol 1-phosphate synthase. Acta Crystallogr.,Sect.D (2003)

Release Date

2003-07-08

Peptides

Inositol-3-phosphate synthase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Inositol-3-phosphate synthase

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