SMTL ID : 1p3y.1 (1 other biounit)

MrsD from Bacillus sp. HIL-Y85/54728

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.54 Å

Oligo State

homo-12-mer

Ligands

12 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 27 residues within 4Å: Chain A: C.16, G.17, S.18, I.19, T.43, K.44, T.45, L.49, E.65, T.91, A.92, N.93, I.94, N.105, N.123, M.124, M.128 Chain D: Y.57 Chain H: E.65, R.72, H.75, A.103, M.104, N.105, T.109 Ligands: FAD.6, FAD.8 27 PLIP interactions: 22 interactions with chain A, 4 interactions with chain H, 1 interactions with chain D Hydrophobic interactions: A:I.19, A:L.49, H:R.72, D:Y.57 Hydrogen bonds: A:G.17, A:G.17, A:I.19, A:T.43, A:T.45, A:T.45, A:T.91, A:T.91, A:A.92, A:N.93, A:I.94, A:N.105, A:N.123, H:E.65, H:T.109, H:T.109 Water bridges: A:K.44, A:K.44, A:H.66, A:H.66, A:N.93, A:N.125, A:N.125 FAD.2: 27 residues within 4Å: Chain B: C.16, G.17, S.18, I.19, T.43, K.44, T.45, L.49, E.65, T.91, A.92, N.93, I.94, N.105, N.123, M.124, M.128 Chain H: Y.57 Chain L: E.65, R.72, H.75, A.103, M.104, N.105, T.109 Ligands: FAD.7, FAD.12 25 PLIP interactions: 4 interactions with chain L, 20 interactions with chain B, 1 interactions with chain H Hydrophobic interactions: L:R.72, B:I.19, B:L.49, H:Y.57 Hydrogen bonds: L:E.65, L:E.65, L:T.109, B:G.17, B:G.17, B:I.19, B:T.43, B:T.45, B:T.45, B:T.91, B:A.92, B:N.93, B:I.94, B:N.105, B:N.123 Water bridges: B:K.44, B:K.44, B:H.66, B:N.93, B:N.125, B:N.125 FAD.3: 27 residues within 4Å: Chain C: C.16, G.17, S.18, I.19, T.43, K.44, T.45, L.49, E.65, T.91, A.92, N.93, I.94, N.105, N.123, M.124, M.128 Chain D: E.65, R.72, H.75, A.103, M.104, N.105, T.109 Chain L: Y.57 Ligands: FAD.4, FAD.11 26 PLIP interactions: 21 interactions with chain C, 4 interactions with chain D, 1 interactions with chain L Hydrophobic interactions: C:I.19, C:L.49, D:R.72, L:Y.57 Hydrogen bonds: C:G.17, C:G.17, C:I.19, C:T.43, C:T.45, C:T.45, C:T.91, C:A.92, C:N.93, C:I.94, C:N.105, C:N.123, D:E.65, D:T.109, D:T.109 Water bridges: C:K.44, C:K.44, C:H.66, C:H.66, C:N.93, C:N.125, C:N.125 FAD.4: 27 residues within 4Å: Chain A: Y.57 Chain D: C.16, G.17, S.18, I.19, T.43, K.44, T.45, L.49, E.65, T.91, A.92, N.93, I.94, N.105, N.123, M.124, M.128 Chain K: E.65, R.72, H.75, A.103, M.104, N.105, T.109 Ligands: FAD.3, FAD.11 25 PLIP interactions: 20 interactions with chain D, 1 interactions with chain A, 4 interactions with chain K Hydrophobic interactions: D:I.19, D:L.49, A:Y.57, K:R.72 Hydrogen bonds: D:G.17, D:G.17, D:I.19, D:T.43, D:T.45, D:T.45, D:T.91, D:A.92, D:N.93, D:I.94, D:N.105, D:N.123, K:E.65, K:E.65, K:T.109 Water bridges: D:K.44, D:K.44, D:H.66, D:N.93, D:N.125, D:N.125 FAD.5: 27 residues within 4Å: Chain E: C.16, G.17, S.18, I.19, T.43, K.44, T.45, L.49, E.65, T.91, A.92, N.93, I.94, N.105, N.123, M.124, M.128 Chain I: E.65, R.72, H.75, A.103, M.104, N.105, T.109 Chain K: Y.57 Ligands: FAD.9, FAD.10 27 PLIP interactions: 22 interactions with chain E, 4 interactions with chain I, 1 interactions with chain K Hydrophobic interactions: E:I.19, E:L.49, I:R.72, K:Y.57 Hydrogen bonds: E:G.17, E:G.17, E:I.19, E:T.43, E:T.45, E:T.45, E:T.91, E:T.91, E:A.92, E:N.93, E:I.94, E:N.105, E:N.123, I:E.65, I:T.109, I:T.109 Water bridges: E:K.44, E:K.44, E:H.66, E:H.66, E:N.93, E:N.125, E:N.125 FAD.6: 27 residues within 4Å: Chain A: E.65, R.72, H.75, A.103, M.104, N.105, T.109 Chain F: C.16, G.17, S.18, I.19, T.43, K.44, T.45, L.49, E.65, T.91, A.92, N.93, I.94, N.105, N.123, M.124, M.128 Chain I: Y.57 Ligands: FAD.1, FAD.8 26 PLIP interactions: 21 interactions with chain F, 4 interactions with chain A, 1 interactions with chain I Hydrophobic interactions: F:I.19, F:L.49, A:R.72, I:Y.57 Hydrogen bonds: F:G.17, F:G.17, F:I.19, F:T.43, F:T.45, F:T.45, F:T.91, F:T.91, F:A.92, F:N.93, F:I.94, F:N.105, F:N.123, A:E.65, A:E.65, A:T.109 Water bridges: F:K.44, F:K.44, F:H.66, F:N.93, F:N.125, F:N.125 FAD.7: 27 residues within 4Å: Chain B: E.65, R.72, H.75, A.103, M.104, N.105, T.109 Chain G: C.16, G.17, S.18, I.19, T.43, K.44, T.45, L.49, E.65, T.91, A.92, N.93, I.94, N.105, N.123, M.124, M.128 Chain J: Y.57 Ligands: FAD.2, FAD.12 25 PLIP interactions: 4 interactions with chain B, 20 interactions with chain G, 1 interactions with chain J Hydrophobic interactions: B:R.72, G:I.19, G:L.49, J:Y.57 Hydrogen bonds: B:E.65, B:E.65, B:T.109, G:G.17, G:G.17, G:I.19, G:T.43, G:T.45, G:T.45, G:T.91, G:A.92, G:N.93, G:I.94, G:N.105, G:N.123 Water bridges: G:K.44, G:K.44, G:H.66, G:N.93, G:N.125, G:N.125 FAD.8: 27 residues within 4Å: Chain B: Y.57 Chain F: E.65, R.72, H.75, A.103, M.104, N.105, T.109 Chain H: C.16, G.17, S.18, I.19, T.43, K.44, T.45, L.49, E.65, T.91, A.92, N.93, I.94, N.105, N.123, M.124, M.128 Ligands: FAD.1, FAD.6 27 PLIP interactions: 4 interactions with chain F, 22 interactions with chain H, 1 interactions with chain B Hydrophobic interactions: F:R.72, H:I.19, H:L.49, B:Y.57 Hydrogen bonds: F:E.65, F:T.109, F:T.109, H:G.17, H:G.17, H:I.19, H:T.43, H:T.45, H:T.45, H:T.91, H:T.91, H:A.92, H:N.93, H:I.94, H:N.105, H:N.123 Water bridges: H:K.44, H:K.44, H:H.66, H:H.66, H:N.93, H:N.125, H:N.125 FAD.9: 27 residues within 4Å: Chain F: Y.57 Chain I: C.16, G.17, S.18, I.19, T.43, K.44, T.45, L.49, E.65, T.91, A.92, N.93, I.94, N.105, N.123, M.124, M.128 Chain J: E.65, R.72, H.75, A.103, M.104, N.105, T.109 Ligands: FAD.5, FAD.10 26 PLIP interactions: 21 interactions with chain I, 4 interactions with chain J, 1 interactions with chain F Hydrophobic interactions: I:I.19, I:L.49, J:R.72, F:Y.57 Hydrogen bonds: I:G.17, I:G.17, I:I.19, I:T.43, I:T.45, I:T.45, I:T.91, I:T.91, I:A.92, I:N.93, I:I.94, I:N.105, I:N.123, J:E.65, J:E.65, J:T.109 Water bridges: I:K.44, I:K.44, I:H.66, I:N.93, I:N.125, I:N.125 FAD.10: 27 residues within 4Å: Chain E: E.65, R.72, H.75, A.103, M.104, N.105, T.109 Chain G: Y.57 Chain J: C.16, G.17, S.18, I.19, T.43, K.44, T.45, L.49, E.65, T.91, A.92, N.93, I.94, N.105, N.123, M.124, M.128 Ligands: FAD.5, FAD.9 27 PLIP interactions: 22 interactions with chain J, 4 interactions with chain E, 1 interactions with chain G Hydrophobic interactions: J:I.19, J:L.49, E:R.72, G:Y.57 Hydrogen bonds: J:G.17, J:G.17, J:I.19, J:T.43, J:T.45, J:T.45, J:T.91, J:T.91, J:A.92, J:N.93, J:I.94, J:N.105, J:N.123, E:E.65, E:T.109, E:T.109 Water bridges: J:K.44, J:K.44, J:H.66, J:H.66, J:N.93, J:N.125, J:N.125 FAD.11: 27 residues within 4Å: Chain C: E.65, R.72, H.75, A.103, M.104, N.105, T.109 Chain E: Y.57 Chain K: C.16, G.17, S.18, I.19, T.43, K.44, T.45, L.49, E.65, T.91, A.92, N.93, I.94, N.105, N.123, M.124, M.128 Ligands: FAD.3, FAD.4 25 PLIP interactions: 20 interactions with chain K, 4 interactions with chain C, 1 interactions with chain E Hydrophobic interactions: K:I.19, K:L.49, C:R.72, E:Y.57 Hydrogen bonds: K:G.17, K:G.17, K:I.19, K:T.43, K:T.45, K:T.45, K:T.91, K:A.92, K:N.93, K:I.94, K:N.105, K:N.123, C:E.65, C:E.65, C:T.109 Water bridges: K:K.44, K:K.44, K:H.66, K:N.93, K:N.125, K:N.125 FAD.12: 27 residues within 4Å: Chain C: Y.57 Chain G: E.65, R.72, H.75, A.103, M.104, N.105, T.109 Chain L: C.16, G.17, S.18, I.19, T.43, K.44, T.45, L.49, E.65, T.91, A.92, N.93, I.94, N.105, N.123, M.124, M.128 Ligands: FAD.2, FAD.7 26 PLIP interactions: 21 interactions with chain L, 1 interactions with chain C, 4 interactions with chain G Hydrophobic interactions: L:I.19, L:L.49, C:Y.57, G:R.72 Hydrogen bonds: L:G.17, L:G.17, L:I.19, L:T.43, L:T.45, L:T.45, L:T.91, L:A.92, L:N.93, L:I.94, L:N.105, L:N.123, G:E.65, G:T.109, G:T.109 Water bridges: L:K.44, L:K.44, L:H.66, L:H.66, L:N.93, L:N.125, L:N.125

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Blaesse, M. et al., Structure of MrsD, an FAD-binding protein of the HFCD family. Acta Crystallogr.,Sect.D (2003)

Release Date

2003-08-05

Peptides

MrsD protein: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
1

B
1

C
1

D
1

E
1

F
1

G
1

H
1

I
1

J
1

K
1

L
1

MrsD protein

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