SMTL ID : 1p49.2 (1 other biounit)

Structure of Human Placental Estrone/DHEA Sulfatase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-trimer

Ligands

6 x BOG: octyl beta-D-glucopyranoside(Non-covalent)

BOG.1: 5 residues within 4Å: Chain A: P.168, L.179, S.197, L.198, L.201 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:P.168, A:L.201 Hydrogen bonds: A:S.197 BOG.2: 5 residues within 4Å: Chain A: H.121, S.122, K.123, D.125, W.537 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:D.125 Hydrogen bonds: A:H.121, A:S.122, A:K.123, A:K.123 Water bridges: A:K.123 BOG.7: 5 residues within 4Å: Chain B: P.168, L.179, S.197, L.198, L.201 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:P.168, B:L.201 Hydrogen bonds: B:S.197 BOG.8: 5 residues within 4Å: Chain B: H.121, S.122, K.123, D.125, W.537 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:D.125 Hydrogen bonds: B:H.121, B:S.122, B:K.123, B:K.123 Water bridges: B:K.123 BOG.13: 5 residues within 4Å: Chain C: P.168, L.179, S.197, L.198, L.201 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:P.168, C:L.201 Hydrogen bonds: C:S.197 BOG.14: 5 residues within 4Å: Chain C: H.121, S.122, K.123, D.125, W.537 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:D.125 Hydrogen bonds: C:H.121, C:S.122, C:K.123, C:K.123 Water bridges: C:K.123

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 9 residues within 4Å: Chain A: G.19, D.20, G.25, N.26, I.29, Q.283, H.284, Y.287, S.339 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:N.26 Hydrogen bonds: A:N.26, A:Q.283, A:H.284, A:S.339 NAG.4: 3 residues within 4Å: Chain A: D.237, N.238, K.276 No protein-ligand interaction detected (PLIP) NAG.9: 9 residues within 4Å: Chain B: G.19, D.20, G.25, N.26, I.29, Q.283, H.284, Y.287, S.339 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:N.26 Hydrogen bonds: B:N.26, B:Q.283, B:H.284, B:S.339 NAG.10: 3 residues within 4Å: Chain B: D.237, N.238, K.276 No protein-ligand interaction detected (PLIP) NAG.15: 9 residues within 4Å: Chain C: G.19, D.20, G.25, N.26, I.29, Q.283, H.284, Y.287, S.339 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:N.26 Hydrogen bonds: C:N.26, C:Q.283, C:H.284, C:S.339 NAG.16: 3 residues within 4Å: Chain C: D.237, N.238, K.276 No protein-ligand interaction detected (PLIP)

3 x CA: CALCIUM ION(Non-covalent)

CA.5: 6 residues within 4Å: Chain A: D.14, D.15, A.54, H.269, D.321, Q.322 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.14, A:D.15, A:D.15, A:D.321 CA.11: 6 residues within 4Å: Chain B: D.14, D.15, A.54, H.269, D.321, Q.322 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.14, B:D.15, B:D.15, B:D.321 CA.17: 6 residues within 4Å: Chain C: D.14, D.15, A.54, H.269, D.321, Q.322 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:D.14, C:D.15, C:D.15, C:D.321

3 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.6: 2 residues within 4Å: Chain A: H.121, K.535 4 PLIP interactions: 4 interactions with chain A Water bridges: A:N.530, A:K.535 Salt bridges: A:H.121, A:K.535 PO4.12: 2 residues within 4Å: Chain B: H.121, K.535 4 PLIP interactions: 4 interactions with chain B Water bridges: B:N.530, B:K.535 Salt bridges: B:H.121, B:K.535 PO4.18: 2 residues within 4Å: Chain C: H.121, K.535 4 PLIP interactions: 4 interactions with chain C Water bridges: C:N.530, C:K.535 Salt bridges: C:H.121, C:K.535

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hernandez-Guzman, F.G. et al., Structure of Human Estrone Sulfatase Suggests Functional Roles of Membrane Association. J.Biol.Chem. (2003)

Release Date

2003-08-12

Peptides

STERYL-SULFATASE: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

STERYL-SULFATASE

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