SMTL ID : 1p4d.1 (2 other biounits)

F factor TraI Relaxase Domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: H.146, H.157, H.159 6 PLIP interactions: 3 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.146, A:H.157, A:H.159, H2O.2, H2O.3, H2O.4

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: R.101, A.105, Q.108, Q.207, L.211 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.101, A:Q.207 EDO.3: 3 residues within 4Å: Chain A: K.100, I.103, D.104 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.104 EDO.4: 2 residues within 4Å: Chain A: F.112, Q.116 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.116 EDO.5: 2 residues within 4Å: Chain A: K.282, E.283 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.282 EDO.6: 3 residues within 4Å: Chain A: A.34, D.111, V.114 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.111 Water bridges: A:G.35, A:G.35

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Datta, S. et al., Structural insights into single-stranded DNA binding and cleavage by F factor TraI. Structure (2003)

Release Date

2003-10-14

Peptides

TraI protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

TraI protein

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