SMTL ID : 1p60.1 (2 other biounits)

Structure of human dCK complexed with 2'-Deoxycytidine and ADP, Space group C 2 2 21

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.96 Å

Oligo State

homo-dimer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 13 residues within 4Å: Chain A: N.32, A.34, A.35, G.36, K.37, S.38, T.39, R.191, L.194, R.195, E.243, D.244, F.245 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:A.34, A:G.36, A:K.37, A:S.38, A:T.39, A:T.39, A:L.194, A:E.243, A:F.245 Water bridges: A:K.37, A:K.37, A:R.195, A:R.195, A:E.243 Salt bridges: A:K.37, A:R.195, A:R.195 pi-Cation interactions: A:R.191 ADP.3: 14 residues within 4Å: Chain B: N.32, A.34, A.35, G.36, K.37, S.38, T.39, R.191, R.195, V.241, E.243, D.244, F.245, Y.249 20 PLIP interactions: 20 interactions with chain B Hydrogen bonds: B:N.32, B:A.34, B:A.35, B:G.36, B:K.37, B:S.38, B:T.39, B:T.39, B:E.243, B:D.244, B:F.245 Water bridges: B:K.37, B:K.37, B:S.38, B:R.197 Salt bridges: B:K.37, B:R.195, B:R.195 pi-Stacking: B:F.245 pi-Cation interactions: B:R.191

2 x DCZ: 2'-DEOXYCYTIDINE(Non-covalent)

DCZ.2: 13 residues within 4Å: Chain A: I.33, E.56, W.61, L.85, M.88, Y.89, F.99, Q.100, R.131, D.136, F.140, R.197, E.200 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:I.33, A:W.61 Hydrogen bonds: A:E.56, A:Y.89, A:Y.89, A:Q.100, A:R.131, A:D.136, A:D.136, A:E.200 Water bridges: A:K.37, A:R.131, A:R.197, A:Y.207 pi-Stacking: A:F.140 DCZ.4: 14 residues within 4Å: Chain B: I.33, E.56, V.58, W.61, L.85, M.88, Y.89, F.99, Q.100, R.131, D.136, F.140, R.197, E.200 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:I.33 Hydrogen bonds: B:E.56, B:Y.89, B:Q.100, B:R.131, B:D.136 Water bridges: B:E.56, B:R.131, B:R.197 pi-Stacking: B:F.140

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sabini, E. et al., Structure of human dCK suggests strategies to improve anticancer and antiviral therapy. Nat.Struct.Biol. (2003)

Release Date

2003-07-01

Peptides

Deoxycytidine kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Deoxycytidine kinase

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