SMTL ID : 1pe6.1

REFINED X-RAY STRUCTURE OF PAPAIN(DOT)E-64-C COMPLEX AT 2.1-ANGSTROMS RESOLUTION

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x E6C: N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-2-METHYL-BUTANE(Covalent)

E6C.1: 13 residues within 4Å: Chain A: Q.19, G.23, S.24, C.25, W.26, Y.61, N.64, G.65, G.66, V.157, D.158, H.159 Ligands: MOH.14 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:Y.61, A:Y.61, A:D.158 Hydrogen bonds: A:Q.19, A:C.25, A:G.66, A:G.66, A:D.158 Water bridges: A:D.158, A:H.159 Salt bridges: A:H.159

14 x MOH: METHANOL(Non-functional Binders)

MOH.2: 2 residues within 4Å: Chain A: R.41, T.42 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.41, A:R.41 MOH.3: 4 residues within 4Å: Chain A: C.22, G.23, C.63 Ligands: MOH.6 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:C.63 MOH.4: 2 residues within 4Å: Chain A: V.110, R.111 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.111 MOH.5: 1 residues within 4Å: Chain A: S.196 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.196, A:S.196 MOH.6: 4 residues within 4Å: Chain A: Q.19, G.20, W.177 Ligands: MOH.3 2 PLIP interactions: 2 interactions with chain A Water bridges: A:G.20, A:G.20 MOH.7: 2 residues within 4Å: Chain A: R.8, G.11 No protein-ligand interaction detected (PLIP) MOH.8: 4 residues within 4Å: Chain A: R.41, R.111, K.211, N.212 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.41 Water bridges: A:K.211 MOH.9: 3 residues within 4Å: Chain A: I.148, N.169, K.190 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.169, A:K.190, A:K.190 MOH.10: 2 residues within 4Å: Chain A: G.43, L.45 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.43, A:N.44 MOH.11: 2 residues within 4Å: Chain A: Y.78, Y.103 No protein-ligand interaction detected (PLIP) MOH.12: 1 residues within 4Å: Chain A: N.127 3 PLIP interactions: 3 interactions with chain A Water bridges: A:S.124, A:S.124, A:N.127 MOH.13: 5 residues within 4Å: Chain A: W.177, G.178, T.179, G.180, W.181 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.179, A:G.180 MOH.14: 2 residues within 4Å: Chain A: V.133 Ligands: E6C.1 No protein-ligand interaction detected (PLIP) MOH.15: 2 residues within 4Å: Chain A: N.195, S.196 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.195, A:S.196

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yamamoto, D. et al., Refined x-ray structure of papain.E-64-c complex at 2.1-A resolution. J.Biol.Chem. (1991)

Release Date

1993-04-15

Peptides

PAPAIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PAPAIN

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