SMTL ID : 1pew.2 (2 other biounits)

High Resolution Crystal Structure of Jto2, a mutant of the non-amyloidogenic Lamba6 Light Chain, Jto

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-tetramer

Ligands

8 x CD: CADMIUM ION(Non-covalent)

CD.1: 2 residues within 4Å: Chain A: D.86 Chain D: H.8 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.86, A:D.86, H2O.1, H2O.1, H2O.1 CD.2: 1 residues within 4Å: Chain B: E.49 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:E.49, B:E.49, H2O.3, H2O.3, H2O.4 CD.3: 1 residues within 4Å: Chain B: D.59 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:D.59, H2O.3, H2O.3, H2O.4, H2O.4 CD.4: 4 residues within 4Å: Chain B: D.86, Y.88 Chain C: H.8 Chain D: S.41 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.86, B:D.86, H2O.5 CD.5: 2 residues within 4Å: Chain B: H.8 Chain C: D.86 5 PLIP interactions: 2 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:D.86, C:D.86, H2O.5, H2O.5, H2O.5 CD.6: 1 residues within 4Å: Chain D: E.49 5 PLIP interactions: 2 interactions with chain D, 3 Ligand-Water interactions Metal complexes: D:E.49, D:E.49, H2O.7, H2O.7, H2O.8 CD.7: 1 residues within 4Å: Chain D: D.59 5 PLIP interactions: 1 interactions with chain D, 4 Ligand-Water interactions Metal complexes: D:D.59, H2O.7, H2O.7, H2O.8, H2O.8 CD.8: 4 residues within 4Å: Chain A: H.8 Chain B: S.41 Chain D: D.86, Y.88 3 PLIP interactions: 2 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:D.86, D:D.86, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wall, J.S. et al., Structural basis of light chain amyloidogenicity: comparison of the thermodynamic properties, fibrillogenic potential and tertiary structural features of four V(lambda)6 proteins. J.Mol.Recog. (2004)

Release Date

2004-07-13

Peptides

Jto2, a LAMBDA-6 TYPE IMMUNOGLOBULIN LIGHT CHAIN, VARIABLE DOMAIN: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Jto2, a LAMBDA-6 TYPE IMMUNOGLOBULIN LIGHT CHAIN, VARIABLE DOMAIN

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