- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x FBP: 1,6-di-O-phosphono-beta-D-fructofuranose(Non-covalent)
- 8 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 4 residues within 4Å:- Chain A: D.104, D.130
- Ligands: FBP.1, ADP.4
5 PLIP interactions:1 interactions with chain A, 1 Ligand-Ligand interactions, 3 Ligand-Water interactions- Metal complexes: A:D.104, FBP.1, H2O.3, H2O.3, H2O.4
MG.3: 3 residues within 4Å:- Chain A: G.186, E.188
- Ligands: ADP.5
4 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:G.186, A:E.188, H2O.2, H2O.2
MG.7: 2 residues within 4Å:- Chain B: D.104
- Ligands: ADP.9
No protein-ligand interaction detected (PLIP)MG.8: 3 residues within 4Å:- Chain B: G.186, E.188
- Ligands: ADP.10
4 PLIP interactions:2 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:G.186, B:E.188, H2O.8, H2O.8
MG.12: 4 residues within 4Å:- Chain C: D.104, D.130
- Ligands: FBP.11, ADP.14
5 PLIP interactions:1 interactions with chain C, 1 Ligand-Ligand interactions, 3 Ligand-Water interactions- Metal complexes: C:D.104, FBP.11, H2O.13, H2O.14, H2O.15
MG.13: 3 residues within 4Å:- Chain C: G.186, E.188
- Ligands: ADP.15
4 PLIP interactions:2 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:G.186, C:E.188, H2O.13, H2O.13
MG.17: 2 residues within 4Å:- Chain D: D.104
- Ligands: ADP.19
No protein-ligand interaction detected (PLIP)MG.18: 3 residues within 4Å:- Chain D: G.186, E.188
- Ligands: ADP.20
4 PLIP interactions:2 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:G.186, D:E.188, H2O.18, H2O.18
- 8 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.4: 17 residues within 4Å:- Chain A: S.10, G.11, G.12, Y.42, R.73, F.74, P.75, F.77, R.78, G.103, D.104, G.105, S.106, M.108, G.109
- Ligands: FBP.1, MG.2
17 PLIP interactions:17 interactions with chain A- Hydrogen bonds: A:G.12, A:F.74, A:F.74, A:G.103, A:D.104, A:G.105, A:S.106
- Water bridges: A:R.78, A:R.78, A:R.78, A:R.112, A:R.112, A:T.126, A:R.172, A:R.172
- Salt bridges: A:R.73, A:R.73
ADP.5: 17 residues within 4Å:- Chain A: R.155, S.159, G.186, E.188, K.212, G.213, K.214, K.215, H.216, Y.320
- Chain B: R.22, R.26, R.55, Y.56, S.59, D.60
- Ligands: MG.3
22 PLIP interactions:9 interactions with chain A, 13 interactions with chain B- Hydrogen bonds: A:S.159, A:S.159, A:K.212, A:K.215, A:H.216, B:S.59, B:D.60, B:D.60
- Water bridges: A:R.155, A:R.155, B:R.22, B:R.22, B:R.55, B:M.61
- Salt bridges: A:R.155, A:K.214, B:R.22, B:R.26, B:R.26, B:R.55
- pi-Stacking: B:Y.56, B:Y.56
ADP.9: 16 residues within 4Å:- Chain B: S.10, G.11, Y.42, R.73, F.74, P.75, F.77, R.78, G.103, D.104, G.105, S.106, M.108, G.109
- Ligands: FBP.6, MG.7
15 PLIP interactions:15 interactions with chain B- Hydrogen bonds: B:S.10, B:F.74, B:F.74, B:G.103, B:D.104, B:G.105, B:S.106
- Water bridges: B:Y.42, B:R.78, B:R.78, B:R.78, B:R.78, B:R.78, B:G.125
- Salt bridges: B:R.73
ADP.10: 16 residues within 4Å:- Chain A: R.22, R.26, R.55, Y.56, S.59, D.60
- Chain B: R.155, S.159, G.186, E.188, K.212, G.213, K.214, K.215, H.216
- Ligands: MG.8
20 PLIP interactions:13 interactions with chain A, 7 interactions with chain B- Hydrogen bonds: A:S.59, A:D.60, A:D.60, B:S.159, B:S.159, B:K.212, B:K.215, B:H.216
- Water bridges: A:R.22, A:R.22, A:R.22, A:M.61
- Salt bridges: A:R.22, A:R.26, A:R.26, A:R.55, B:R.155, B:K.214
- pi-Stacking: A:Y.56, A:Y.56
ADP.14: 17 residues within 4Å:- Chain C: S.10, G.11, G.12, Y.42, R.73, F.74, P.75, F.77, R.78, G.103, D.104, G.105, S.106, M.108, G.109
- Ligands: FBP.11, MG.12
17 PLIP interactions:17 interactions with chain C- Hydrogen bonds: C:G.12, C:F.74, C:F.74, C:G.103, C:D.104, C:G.105, C:S.106
- Water bridges: C:R.78, C:R.78, C:R.78, C:R.112, C:R.112, C:T.126, C:R.172, C:R.172
- Salt bridges: C:R.73, C:R.73
ADP.15: 17 residues within 4Å:- Chain C: R.155, S.159, G.186, E.188, K.212, G.213, K.214, K.215, H.216, Y.320
- Chain D: R.22, R.26, R.55, Y.56, S.59, D.60
- Ligands: MG.13
22 PLIP interactions:13 interactions with chain D, 9 interactions with chain C- Hydrogen bonds: D:S.59, D:D.60, D:D.60, C:S.159, C:S.159, C:K.212, C:K.215, C:H.216
- Water bridges: D:R.22, D:R.22, D:R.55, D:M.61, C:R.155, C:R.155
- Salt bridges: D:R.22, D:R.26, D:R.26, D:R.55, C:R.155, C:K.214
- pi-Stacking: D:Y.56, D:Y.56
ADP.19: 16 residues within 4Å:- Chain D: S.10, G.11, Y.42, R.73, F.74, P.75, F.77, R.78, G.103, D.104, G.105, S.106, M.108, G.109
- Ligands: FBP.16, MG.17
15 PLIP interactions:15 interactions with chain D- Hydrogen bonds: D:S.10, D:F.74, D:F.74, D:G.103, D:D.104, D:G.105, D:S.106
- Water bridges: D:Y.42, D:R.78, D:R.78, D:R.78, D:R.78, D:R.78, D:G.125
- Salt bridges: D:R.73
ADP.20: 16 residues within 4Å:- Chain C: R.22, R.26, R.55, Y.56, S.59, D.60
- Chain D: R.155, S.159, G.186, E.188, K.212, G.213, K.214, K.215, H.216
- Ligands: MG.18
20 PLIP interactions:7 interactions with chain D, 13 interactions with chain C- Hydrogen bonds: D:S.159, D:S.159, D:K.212, D:K.215, D:H.216, C:S.59, C:D.60, C:D.60
- Salt bridges: D:R.155, D:K.214, C:R.22, C:R.26, C:R.26, C:R.55
- Water bridges: C:R.22, C:R.22, C:R.22, C:M.61
- pi-Stacking: C:Y.56, C:Y.56
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shirakihara, Y. et al., Crystal structure of the complex of phosphofructokinase from Escherichia coli with its reaction products. J.Mol.Biol. (1988)
- Release Date
- 1989-01-09
- Peptides
- PHOSPHOFRUCTOKINASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x FBP: 1,6-di-O-phosphono-beta-D-fructofuranose(Non-covalent)
- 8 x MG: MAGNESIUM ION(Non-covalent)
- 8 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shirakihara, Y. et al., Crystal structure of the complex of phosphofructokinase from Escherichia coli with its reaction products. J.Mol.Biol. (1988)
- Release Date
- 1989-01-09
- Peptides
- PHOSPHOFRUCTOKINASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B