SMTL ID : 1pim.1

DITHIONITE REDUCED E. COLI RIBONUCLEOTIDE REDUCTASE R2 SUBUNIT, D84E MUTANT

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

4 x FE: FE (III) ION(Non-covalent)

FE.1: 5 residues within 4Å: Chain A: E.84, E.115, H.118, E.238 Ligands: FE.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.84, A:E.84, A:E.115, A:H.118, H2O.50 FE.2: 6 residues within 4Å: Chain A: W.111, E.115, E.204, E.238, H.241 Ligands: FE.1 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.115, A:E.204, A:E.238, A:H.241, H2O.50 FE.3: 5 residues within 4Å: Chain B: E.84, E.115, H.118, E.238 Ligands: FE.4 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.84, B:E.115, B:H.118, B:E.238, H2O.151 FE.4: 6 residues within 4Å: Chain B: W.111, E.115, E.204, E.238, H.241 Ligands: FE.3 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.115, B:E.204, B:E.238, B:H.241, H2O.151

7 x HG: MERCURY (II) ION(Non-covalent)

HG.5: 5 residues within 4Å: Chain B: V.210, A.213, C.214, L.304 Ligands: HG.6 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:V.210 HG.6: 6 residues within 4Å: Chain B: N.76, V.210, C.214, L.290, L.304 Ligands: HG.5 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:C.214 HG.7: 5 residues within 4Å: Chain A: Y.157, C.196, L.197, V.200 Ligands: HG.8 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:C.196 HG.8: 5 residues within 4Å: Chain A: Y.156, Y.157, C.196, V.200 Ligands: HG.7 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:C.196 HG.9: 4 residues within 4Å: Chain B: Y.194, L.195, C.268, C.272 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.268, B:C.268, B:C.272 HG.10: 5 residues within 4Å: Chain A: V.210, A.213, C.214, L.299, L.304 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:C.214 HG.11: 3 residues within 4Å: Chain B: Y.156, Y.157, C.196 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:C.196

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Voegtli, W.C. et al., Crystal Structure of the Ribonucleotide Reductase R2 Mutant that Accumulates a u-1,2-Peroxodiiron(III)Intermediate during Oxygen Activation. J.Am.Chem.Soc. (2000)

Release Date

2003-06-17

Peptides

Ribonucleoside-diphosphate reductase 1 beta chain: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ribonucleoside-diphosphate reductase 1 beta chain

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