SMTL ID : 1piw.1

APO AND HOLO STRUCTURES OF AN NADP(H)-DEPENDENT CINNAMYL ALCOHOL DEHYDROGENASE FROM SACCHAROMYCES CEREVISIAE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: S.99, C.100, L.101, C.103, C.106, C.114 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.100, A:C.103, A:C.106, A:C.114 ZN.2: 5 residues within 4Å: Chain A: C.46, S.48, H.68, C.163 Ligands: NAP.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.46, A:H.68, A:C.163 ZN.4: 6 residues within 4Å: Chain B: S.99, C.100, L.101, C.103, C.106, C.114 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.100, B:C.103, B:C.106, B:C.114 ZN.5: 5 residues within 4Å: Chain B: C.46, S.48, H.68, C.163 Ligands: NAP.6 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.46, B:S.48, B:H.68, B:C.163

2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)(Covalent)

NAP.3: 31 residues within 4Å: Chain A: C.46, G.47, S.48, H.51, W.57, C.163, T.167, G.187, L.188, G.189, G.190, I.191, S.210, R.211, K.215, C.250, A.251, S.252, S.253, T.255, D.256, I.257, I.275, S.276, I.277, Y.298, S.299, A.300, L.301, R.348 Ligands: ZN.2 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:T.167, A:I.191, A:I.277, A:L.301 Hydrogen bonds: A:G.47, A:L.188, A:G.190, A:I.191, A:R.211, A:K.215, A:S.252, A:S.252, A:S.253, A:T.255, A:D.256, A:I.275, A:I.277, A:I.277, A:Y.298 Salt bridges: A:R.211, A:K.215, A:R.348 pi-Cation interactions: A:R.211 NAP.6: 22 residues within 4Å: Chain B: G.47, C.163, T.167, G.187, L.188, G.189, G.190, I.191, S.210, R.211, K.215, C.250, A.251, S.252, I.275, S.276, I.277, S.299, A.300, L.301, R.348 Ligands: ZN.5 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:T.167, B:L.301 Hydrogen bonds: B:G.47, B:L.188, B:G.190, B:I.191, B:K.215, B:S.252, B:I.277, B:L.301 Salt bridges: B:R.211, B:K.215, B:R.348 pi-Cation interactions: B:R.211

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Valencia, E. et al., Apo and Holo Structures of an NADP(H)-dependent Cinnamyl Alcohol Dehydrogenase from Saccharomyces cerevisiae. J.Mol.Biol. (2004)

Release Date

2004-08-10

Peptides

Hypothetical zinc-type alcohol dehydrogenase-like protein in PRE5-FET4 intergenic region: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Hypothetical zinc-type alcohol dehydrogenase-like protein in PRE5-FET4 intergenic region

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