SMTL ID : 1pj6.2 (1 other biounit)

Crystal structure of dimethylglycine oxidase of Arthrobacter globiformis in complex with folic acid

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 2 residues within 4Å: Chain A: D.257, V.412 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.257

1 x FOL: FOLIC ACID(Non-covalent)

FOL.2: 11 residues within 4Å: Chain A: L.508, Y.539, T.554, Y.631, F.632, L.649, S.650, Y.651, E.658, Y.699, F.719 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:Y.539, A:Y.539, A:F.632, A:F.632, A:Y.699, A:F.719 Hydrogen bonds: A:Y.631 Water bridges: A:K.532, A:K.532, A:V.537, A:V.537, A:Y.539, A:D.552, A:D.552, A:T.554, A:T.554, A:T.554, A:F.632, A:Y.651, A:E.658 Salt bridges: A:E.658 pi-Stacking: A:Y.651, A:Y.651

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Covalent)

FAD.3: 31 residues within 4Å: Chain A: G.11, G.13, I.14, V.15, D.35, Q.36, P.42, G.44, S.45, T.46, H.48, A.49, P.50, G.51, L.52, T.172, T.173, V.174, C.202, A.203, G.204, W.206, I.210, H.225, Y.259, G.333, I.334, V.360, W.361, V.362, T.363 26 PLIP interactions: 26 interactions with chain A Hydrophobic interactions: A:P.50 Hydrogen bonds: A:V.15, A:Q.36, A:G.44, A:S.45, A:T.46, A:T.46, A:G.51, A:L.52, A:L.52, A:V.174, A:V.174, A:G.204, A:Y.259, A:V.362, A:T.363 Water bridges: A:G.13, A:G.13, A:Q.36, A:Q.36, A:G.43, A:G.43, A:F.205, A:F.205, A:V.360 pi-Stacking: A:W.206

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Leys, D. et al., Channelling and formation of 'active' formaldehyde in dimethylglycine oxidase. Embo J. (2003)

Release Date

2003-10-07

Peptides

N,N-dimethylglycine oxidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

N,N-dimethylglycine oxidase

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