SMTL ID : 1pjc.1

L-ALANINE DEHYDROGENASE COMPLEXED WITH NAD

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-hexamer

Ligands

6 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 24 residues within 4Å: Chain A: S.133, A.136, G.174, G.175, G.176, V.177, V.178, F.196, D.197, I.198, N.199, S.219, A.237, V.238, L.239, V.240, L.248, V.266, A.267, Q.270, P.298, N.299, M.300, P.301 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:A.136, A:V.266 Hydrogen bonds: A:S.133, A:V.177, A:V.178, A:I.198, A:S.219, A:V.238, A:L.239, A:V.266, A:N.299, A:M.300 Water bridges: A:G.176, A:G.179, A:N.199, A:S.219, A:D.269, A:N.299 NAD.2: 24 residues within 4Å: Chain B: S.133, A.136, G.174, G.175, G.176, V.177, V.178, F.196, D.197, I.198, N.199, S.219, A.237, V.238, L.239, V.240, L.248, V.266, A.267, Q.270, P.298, N.299, M.300, P.301 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:A.136, B:V.266 Hydrogen bonds: B:S.133, B:V.177, B:V.178, B:I.198, B:S.219, B:V.238, B:L.239, B:V.266, B:N.299, B:M.300 Water bridges: B:G.176, B:G.179, B:N.199, B:S.219, B:D.269, B:N.299 NAD.3: 24 residues within 4Å: Chain C: S.133, A.136, G.174, G.175, G.176, V.177, V.178, F.196, D.197, I.198, N.199, S.219, A.237, V.238, L.239, V.240, L.248, V.266, A.267, Q.270, P.298, N.299, M.300, P.301 18 PLIP interactions: 18 interactions with chain C Hydrophobic interactions: C:A.136, C:V.266 Hydrogen bonds: C:S.133, C:V.177, C:V.178, C:I.198, C:S.219, C:V.238, C:L.239, C:V.266, C:N.299, C:M.300 Water bridges: C:G.176, C:G.179, C:N.199, C:S.219, C:D.269, C:N.299 NAD.4: 24 residues within 4Å: Chain D: S.133, A.136, G.174, G.175, G.176, V.177, V.178, F.196, D.197, I.198, N.199, S.219, A.237, V.238, L.239, V.240, L.248, V.266, A.267, Q.270, P.298, N.299, M.300, P.301 18 PLIP interactions: 18 interactions with chain D Hydrophobic interactions: D:A.136, D:V.266 Hydrogen bonds: D:S.133, D:V.177, D:V.178, D:I.198, D:S.219, D:V.238, D:L.239, D:V.266, D:N.299, D:M.300 Water bridges: D:G.176, D:G.179, D:N.199, D:S.219, D:D.269, D:N.299 NAD.5: 24 residues within 4Å: Chain E: S.133, A.136, G.174, G.175, G.176, V.177, V.178, F.196, D.197, I.198, N.199, S.219, A.237, V.238, L.239, V.240, L.248, V.266, A.267, Q.270, P.298, N.299, M.300, P.301 18 PLIP interactions: 18 interactions with chain E Hydrophobic interactions: E:A.136, E:V.266 Hydrogen bonds: E:S.133, E:V.177, E:V.178, E:I.198, E:S.219, E:V.238, E:L.239, E:V.266, E:N.299, E:M.300 Water bridges: E:G.176, E:G.179, E:N.199, E:S.219, E:D.269, E:N.299 NAD.6: 24 residues within 4Å: Chain F: S.133, A.136, G.174, G.175, G.176, V.177, V.178, F.196, D.197, I.198, N.199, S.219, A.237, V.238, L.239, V.240, L.248, V.266, A.267, Q.270, P.298, N.299, M.300, P.301 18 PLIP interactions: 18 interactions with chain F Hydrophobic interactions: F:A.136, F:V.266 Hydrogen bonds: F:S.133, F:V.177, F:V.178, F:I.198, F:S.219, F:V.238, F:L.239, F:V.266, F:N.299, F:M.300 Water bridges: F:G.176, F:G.179, F:N.199, F:S.219, F:D.269, F:N.299

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baker, P.J. et al., Analysis of the structure and substrate binding of Phormidium lapideum alanine dehydrogenase. Nat.Struct.Biol. (1998)

Release Date

1999-07-15

Peptides

PROTEIN (L-ALANINE DEHYDROGENASE): ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

PROTEIN (L-ALANINE DEHYDROGENASE)

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