- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.90 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x LU: LUTETIUM (III) ION(Non-covalent)
- 8 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
NAD.2: 23 residues within 4Å:- Chain A: R.165, N.259, T.283, L.310, G.311, A.312, G.313, E.314, A.315, F.344, D.345, K.346, V.392, A.393, G.394, A.395, L.398, L.419, S.420, N.421, G.446, G.465, N.467
15 PLIP interactions:15 interactions with chain A- Hydrophobic interactions: A:T.283
- Hydrogen bonds: A:A.312, A:A.312, A:G.313, A:A.315, A:D.345, A:K.346, A:N.421, A:N.421, A:N.421, A:G.465, A:N.467, A:N.467
- Salt bridges: A:R.165, A:R.165
NAD.3: 12 residues within 4Å:- Chain A: H.154, K.156, G.192, I.193, R.194, R.197, I.479, L.480, R.542, Y.552, R.556, W.558
10 PLIP interactions:1 interactions with chain D, 9 interactions with chain A- Water bridges: D:D.244
- Hydrogen bonds: A:H.154, A:K.156, A:R.194, A:R.197, A:R.197, A:R.556, A:W.558
- Salt bridges: A:R.542, A:R.556
NAD.5: 23 residues within 4Å:- Chain B: R.165, N.259, T.283, L.310, G.311, A.312, G.313, E.314, A.315, F.344, D.345, K.346, V.392, A.393, G.394, A.395, L.398, L.419, S.420, N.421, G.446, G.465, N.467
12 PLIP interactions:12 interactions with chain B- Hydrophobic interactions: B:T.283
- Hydrogen bonds: B:A.312, B:A.312, B:G.313, B:A.315, B:K.346, B:N.421, B:N.421, B:N.421, B:G.465
- Salt bridges: B:R.165, B:R.165
NAD.6: 10 residues within 4Å:- Chain B: H.154, G.192, I.193, R.194, R.197, I.479, L.480, R.542, R.556, W.558
8 PLIP interactions:8 interactions with chain B- Hydrogen bonds: B:H.154, B:R.194, B:R.197, B:R.197, B:R.556, B:W.558
- Salt bridges: B:R.542, B:R.556
NAD.8: 22 residues within 4Å:- Chain C: R.165, N.259, T.283, L.310, G.311, A.312, G.313, E.314, A.315, D.345, K.346, V.392, A.393, G.394, A.395, L.398, L.419, S.420, N.421, G.446, G.465, N.467
13 PLIP interactions:13 interactions with chain C- Hydrophobic interactions: C:T.283
- Hydrogen bonds: C:A.312, C:G.313, C:A.315, C:K.346, C:N.421, C:N.421, C:N.421, C:G.465, C:N.467, C:N.467
- Salt bridges: C:R.165, C:R.165
NAD.9: 12 residues within 4Å:- Chain C: H.154, K.156, G.192, I.193, R.194, R.197, I.479, L.480, N.482, R.542, Y.552, R.556
11 PLIP interactions:11 interactions with chain C- Hydrogen bonds: C:R.194, C:R.194, C:R.197, C:R.197, C:Y.552, C:Y.552, C:R.556
- Salt bridges: C:R.542, C:R.556, C:R.556
- pi-Cation interactions: C:R.197
NAD.11: 22 residues within 4Å:- Chain D: R.165, N.259, T.283, L.310, G.311, A.312, G.313, E.314, A.315, D.345, K.346, V.392, A.393, G.394, A.395, L.398, L.419, S.420, N.421, G.446, G.465, N.467
14 PLIP interactions:14 interactions with chain D- Hydrophobic interactions: D:T.283
- Hydrogen bonds: D:A.312, D:A.312, D:G.313, D:E.314, D:A.315, D:D.345, D:K.346, D:N.421, D:N.421, D:N.421, D:G.465
- Salt bridges: D:R.165, D:R.165
NAD.12: 13 residues within 4Å:- Chain D: K.156, G.192, I.193, R.194, R.197, I.479, L.480, N.482, R.542, Y.552, R.556, W.558, D.563
13 PLIP interactions:13 interactions with chain D- Hydrogen bonds: D:G.192, D:R.194, D:R.194, D:R.197, D:R.197, D:Y.552, D:W.558, D:D.563
- Salt bridges: D:R.542, D:R.556, D:R.556
- pi-Cation interactions: D:R.197, D:R.197
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yang, Z. et al., Potent and competitive inhibition of malic enzymes by lanthanide ions. Biochem.Biophys.Res.Commun. (2000)
- Release Date
- 2003-06-17
- Peptides
- NAD-dependent malic enzyme, mitochondrial: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
EB
FC
GD
H
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.90 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x LU: LUTETIUM (III) ION(Non-covalent)
- 8 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yang, Z. et al., Potent and competitive inhibition of malic enzymes by lanthanide ions. Biochem.Biophys.Res.Commun. (2000)
- Release Date
- 2003-06-17
- Peptides
- NAD-dependent malic enzyme, mitochondrial: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
EB
FC
GD
H