SMTL ID : 1pkh.1 (2 other biounits)

STRUCTURAL BASIS FOR RECOGNITION AND CATALYSIS BY THE BIFUNCTIONAL DCTP DEAMINASE AND DUTPASE FROM METHANOCOCCUS JANNASCHII

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.42 Å

Oligo State

homo-hexamer

Ligands

27 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: D.25, F.26, V.27, G.28, D.33, R.160 Ligand excluded by PLIP EDO.2: 4 residues within 4Å: Chain A: D.174, G.176, Y.177, S.178 Ligand excluded by PLIP EDO.3: 6 residues within 4Å: Chain A: P.21, N.23, T.35, N.101, E.102, N.158 Ligand excluded by PLIP EDO.4: 6 residues within 4Å: Chain B: D.25, F.26, V.27, G.28, D.33, R.160 Ligand excluded by PLIP EDO.5: 4 residues within 4Å: Chain B: D.174, G.176, Y.177, S.178 Ligand excluded by PLIP EDO.6: 6 residues within 4Å: Chain B: P.21, N.23, T.35, N.101, E.102, N.158 Ligand excluded by PLIP EDO.7: 6 residues within 4Å: Chain C: D.25, F.26, V.27, G.28, D.33, R.160 Ligand excluded by PLIP EDO.8: 4 residues within 4Å: Chain C: D.174, G.176, Y.177, S.178 Ligand excluded by PLIP EDO.9: 6 residues within 4Å: Chain C: P.21, N.23, T.35, N.101, E.102, N.158 Ligand excluded by PLIP EDO.10: 4 residues within 4Å: Chain D: E.76, I.79, N.80, K.83 Ligand excluded by PLIP EDO.11: 6 residues within 4Å: Chain D: D.25, F.26, V.27, G.28, D.33, R.160 Ligand excluded by PLIP EDO.12: 7 residues within 4Å: Chain D: E.39, F.40, I.41, L.97, G.98, T.99, T.143 Ligand excluded by PLIP EDO.13: 6 residues within 4Å: Chain D: K.15, R.16, I.18, E.105, L.106, P.107 Ligand excluded by PLIP EDO.14: 5 residues within 4Å: Chain D: G.37, D.38, N.101, K.157, N.158 Ligand excluded by PLIP EDO.15: 4 residues within 4Å: Chain D: F.26, T.35, N.101, N.158 Ligand excluded by PLIP EDO.16: 4 residues within 4Å: Chain E: E.76, I.79, N.80, K.83 Ligand excluded by PLIP EDO.17: 6 residues within 4Å: Chain E: D.25, F.26, V.27, G.28, D.33, R.160 Ligand excluded by PLIP EDO.18: 7 residues within 4Å: Chain E: E.39, F.40, I.41, L.97, G.98, T.99, T.143 Ligand excluded by PLIP EDO.19: 6 residues within 4Å: Chain E: K.15, R.16, I.18, E.105, L.106, P.107 Ligand excluded by PLIP EDO.20: 5 residues within 4Å: Chain E: G.37, D.38, N.101, K.157, N.158 Ligand excluded by PLIP EDO.21: 4 residues within 4Å: Chain E: F.26, T.35, N.101, N.158 Ligand excluded by PLIP EDO.22: 4 residues within 4Å: Chain F: E.76, I.79, N.80, K.83 Ligand excluded by PLIP EDO.23: 6 residues within 4Å: Chain F: D.25, F.26, V.27, G.28, D.33, R.160 Ligand excluded by PLIP EDO.24: 7 residues within 4Å: Chain F: E.39, F.40, I.41, L.97, G.98, T.99, T.143 Ligand excluded by PLIP EDO.25: 6 residues within 4Å: Chain F: K.15, R.16, I.18, E.105, L.106, P.107 Ligand excluded by PLIP EDO.26: 5 residues within 4Å: Chain F: G.37, D.38, N.101, K.157, N.158 Ligand excluded by PLIP EDO.27: 4 residues within 4Å: Chain F: F.26, T.35, N.101, N.158 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huffman, J.L. et al., Structural basis for recognition and catalysis by the bifunctional dCTP deaminase and dUTPase from Methanococcus jannaschii. J.Mol.Biol. (2003)

Release Date

2003-08-19

Peptides

Bifunctional deaminase/diphosphatase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
B

E
B

F
B

Bifunctional deaminase/diphosphatase

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