SMTL ID : 1pm7.1

RmlC (dTDP-6-DEOXY-D-XYLO-4-HEXULOSE 3,5-EPIMERASE)STRUCTURE FROM MYCOBACTERIUM TUBERCULOSIS AND INHIBITOR DESIGN. THE APO STRUCTURE.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 5 residues within 4Å: Chain A: R.59, H.62, K.72, H.119, Y.132 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:H.62, A:K.72, A:H.119 ACT.3: 4 residues within 4Å: Chain B: H.62, K.72, H.119, Y.132 4 PLIP interactions: 4 interactions with chain B Water bridges: B:N.49 Salt bridges: B:H.62, B:K.72, B:H.119

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: M.1, K.2, P.16, T.17 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:M.1, A:M.1, A:K.2, A:K.2 GOL.4: 10 residues within 4Å: Chain B: M.1, I.14, P.16, E.28, W.29, L.30, T.31, G.34, F.35, Y.73 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:T.15, B:E.28, B:T.31, B:G.34 Water bridges: B:E.28

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Babaoglu, K. et al., Novel inhibitors of an emerging target in Mycobacterium tuberculosis; substituted thiazolidinones as inhibitors of dTDP-rhamnose synthesis. Bioorg.Med.Chem.Lett. (2003)

Release Date

2003-12-09

Peptides

RFBC: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

RFBC

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