SMTL ID : 1pmh.1

Crystal structure of Caldicellulosiruptor saccharolyticus CBM27-1 in complex with mannohexaose

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.06 Å

Oligo State

monomer

Ligands

1 x MAN- BMA- BMA- BMA- BMA- BMA: beta-D-mannopyranose-(1-4)-beta-D-mannopyranose-(1-4)-beta-D-mannopyranose-(1-4)-beta-D-mannopyranose-(1-4)-beta-D-mannopyranose-(1-4)-alpha-D-mannopyranose

MAN-BMA-BMA-BMA-BMA-BMA.1: 11 residues within 4Å: Chain A: W.23, G.59, W.60, Q.62, E.74, K.106, N.110, W.113, R.155, Q.161, Q.165 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.155 Water bridges: A:Q.165, A:Q.165, A:Q.165

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 5 residues within 4Å: Chain A: D.10, E.12, N.44, Y.46, D.176 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.10, A:E.12, A:Y.46, A:D.176, H2O.2

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 7 residues within 4Å: Chain A: K.28, C.29, K.31, E.53, F.54, N.55, D.61 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.31, A:K.31, A:D.61 EDO.4: 3 residues within 4Å: Chain A: A.145, R.151, A.185 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.151 Water bridges: A:A.185, A:A.185 EDO.5: 5 residues within 4Å: Chain A: S.18, W.68, G.71, V.73 Ligands: EDO.6 No protein-ligand interaction detected (PLIP) EDO.6: 9 residues within 4Å: Chain A: S.18, G.20, E.21, A.22, G.66, T.67, W.68, Q.157 Ligands: EDO.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.68, A:Q.157

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Roske, Y. et al., High-resolution crystal structures of Caldicellulosiruptor strain Rt8B.4 carbohydrate-binding module CBM27-1 and its complex with mannohexaose. J.Mol.Biol. (2004)

Release Date

2004-06-22

Peptides

beta-1,4-mannanase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
X

beta-1,4-mannanase

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