SMTL ID : 1pn3.2 (1 other biounit)

Crystal Structure of TDP-epi-Vancosaminyltransferase GtfA in complexes with TDP and the acceptor substrate DVV.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

1 x MLU- OMZ- ASN- GHP- GHP- OMY- 3FG: DESVANCOSAMINYL VANCOMYCIN(Non-covalent)

MLU-OMZ-ASN-GHP-GHP-OMY-3FG.1: 24 residues within 4Å: Chain A: C.8, G.9, S.10, D.13, V.57, P.68, P.69, G.70, A.71, A.72, G.100, L.101, L.102, P.103, H.128, M.140, Y.141, G.144, A.145, L.148, F.149, Y.169, Y.173 Ligands: BGC.2 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:A.72, A:L.102, A:Y.141 Hydrogen bonds: A:S.10, A:S.10, A:D.13, A:V.57, A:G.70, A:G.70, A:G.70, A:L.101, A:L.102, A:H.128, A:A.145 Water bridges: A:S.10, A:S.10 pi-Stacking: A:Y.141

1 x BGC: beta-D-glucopyranose(Non-covalent)

BGC.2: 7 residues within 4Å: Chain A: D.127, H.128, Q.133, Y.141 Ligands: MLU-OMZ-ASN-GHP-GHP-OMY-3FG.1, MLU-OMZ-ASN-GHP-GHP-OMY-3FG.1, MLU-OMZ-ASN-GHP-GHP-OMY-3FG.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.133, A:Q.133, A:Q.133 Water bridges: A:Y.141

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mulichak, A.M. et al., Structure of the Tdp-Epi-Vancosaminyltransferase Gtfa from the Chloroeremomycin Biosynthetic Pathway. Proc.Natl.Acad.Sci.USA (2003)

Release Date

2003-08-12

Peptides

GLYCOSYLTRANSFERASE GTFA: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

GLYCOSYLTRANSFERASE GTFA

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