SMTL ID : 1pop.1

X-RAY CRYSTALLOGRAPHIC STRUCTURE OF A PAPAIN-LEUPEPTIN COMPLEX

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x ACE- LEU- LEU- AR7: LEUPEPTIN(Non-covalent)

ACE-LEU-LEU-AR7.1: 18 residues within 4Å: Chain A: Q.19, G.23, S.24, C.25, W.26, Y.61, N.64, G.65, G.66, Y.67, P.68, V.133, D.158, H.159, A.160 Ligands: MOH.15, MOH.24, MOH.25 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Y.61, A:V.133 Hydrogen bonds: A:Q.19, A:C.25, A:G.66, A:G.66, A:D.158

24 x MOH: METHANOL(Non-functional Binders)

MOH.2: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP MOH.3: 3 residues within 4Å: Chain A: Y.144, R.145, G.146 Ligand excluded by PLIP MOH.4: 2 residues within 4Å: Chain A: I.40, R.41 Ligand excluded by PLIP MOH.5: 3 residues within 4Å: Chain A: I.1, A.126, N.127 Ligand excluded by PLIP MOH.6: 4 residues within 4Å: Chain A: S.97, R.98, G.101, Y.103 Ligand excluded by PLIP MOH.7: 8 residues within 4Å: Chain A: C.153, G.154, N.155, N.195, G.198, V.199, C.200, G.201 Ligand excluded by PLIP MOH.8: 5 residues within 4Å: Chain A: Y.123, S.124, N.127, Q.128, Y.208 Ligand excluded by PLIP MOH.9: 2 residues within 4Å: Chain A: N.169, K.190 Ligand excluded by PLIP MOH.10: 1 residues within 4Å: Chain A: L.143 Ligand excluded by PLIP MOH.11: 2 residues within 4Å: Chain A: R.111, Q.112 Ligand excluded by PLIP MOH.12: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP MOH.13: 2 residues within 4Å: Chain A: D.140, G.151 Ligand excluded by PLIP MOH.14: 2 residues within 4Å: Chain A: P.15, L.45 Ligand excluded by PLIP MOH.15: 6 residues within 4Å: Chain A: P.68, W.69, V.133, S.205, F.207 Ligands: ACE-LEU-LEU-AR7.1 Ligand excluded by PLIP MOH.16: 2 residues within 4Å: Chain A: Q.77, Y.78 Ligand excluded by PLIP MOH.17: 2 residues within 4Å: Chain A: R.188 Ligands: MOH.18 Ligand excluded by PLIP MOH.18: 5 residues within 4Å: Chain A: G.146, G.147, E.183, R.188 Ligands: MOH.17 Ligand excluded by PLIP MOH.19: 1 residues within 4Å: Chain A: Y.208 Ligand excluded by PLIP MOH.20: 5 residues within 4Å: Chain A: I.38, T.42, N.44, N.46, Y.48 Ligand excluded by PLIP MOH.21: 2 residues within 4Å: Chain A: Y.82, A.104 Ligand excluded by PLIP MOH.22: 4 residues within 4Å: Chain A: I.37, R.41, N.127, Q.128 Ligand excluded by PLIP MOH.23: 2 residues within 4Å: Chain A: Y.116, S.196 Ligand excluded by PLIP MOH.24: 4 residues within 4Å: Chain A: Q.19, H.159, W.177 Ligands: ACE-LEU-LEU-AR7.1 Ligand excluded by PLIP MOH.25: 5 residues within 4Å: Chain A: S.21, G.23, C.63, N.64 Ligands: ACE-LEU-LEU-AR7.1 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schroder, E. et al., X-ray crystallographic structure of a papain-leupeptin complex. FEBS Lett. (1993)

Release Date

1993-10-31

Peptides

PAPAIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PAPAIN

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