SMTL ID : 1pot.1

SPERMIDINE/PUTRESCINE-BINDING PROTEIN COMPLEXED WITH SPERMIDINE (MONOMER FORM)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x SPD: SPERMIDINE(Non-covalent)

SPD.1: 13 residues within 4Å: Chain A: W.11, T.12, E.13, Y.14, S.60, Y.62, D.145, E.148, W.206, W.232, D.234, Y.270, Q.304 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:W.11, A:W.11, A:Y.14, A:W.206 Hydrogen bonds: A:E.13, A:E.13, A:E.13, A:Y.14, A:E.148, A:D.234, A:Q.304 Water bridges: A:T.12

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sugiyama, S. et al., The 1.8-A X-ray structure of the Escherichia coli PotD protein complexed with spermidine and the mechanism of polyamine binding. Protein Sci. (1996)

Release Date

1996-12-07

Peptides

SPERMIDINE/PUTRESCINE-BINDING PROTEIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

SPERMIDINE/PUTRESCINE-BINDING PROTEIN