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SMTL ID : 1pt5.1
Crystal structure of gene yfdW of E. coli
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 2.00 Å
Oligo State
homo-dimer
Ligands
2 x
ACO
:
ACETYL COENZYME *A
(Non-covalent)
ACO.1:
27 residues within 4Å:
Chain A:
F.34
,
V.37
,
S.39
,
E.58
,
R.59
,
Y.80
,
L.93
,
N.94
,
T.95
,
K.96
,
N.117
,
F.118
,
H.119
,
A.122
,
I.145
,
K.146
,
G.147
,
K.158
,
A.159
,
Y.160
,
E.161
,
D.190
,
M.221
Chain B:
G.269
,
G.270
,
Q.294
,
Q.296
21
PLIP interactions
:
20 interactions with chain A
,
1 interactions with chain B
Hydrophobic interactions:
A:V.37
,
A:K.158
,
A:Y.160
,
A:Y.160
Hydrogen bonds:
A:S.39
,
A:L.93
,
A:T.95
,
A:N.117
,
A:N.117
,
A:H.119
,
A:A.159
,
A:A.159
,
A:E.161
,
B:Q.296
Water bridges:
A:R.59
,
A:R.59
,
A:K.158
,
A:K.158
Salt bridges:
A:K.96
,
A:H.119
,
A:K.158
ACO.2:
24 residues within 4Å:
Chain A:
Q.294
Chain B:
F.34
,
V.37
,
Q.38
,
S.39
,
E.58
,
R.59
,
Y.80
,
L.93
,
N.94
,
T.95
,
K.96
,
N.117
,
F.118
,
H.119
,
A.122
,
I.145
,
K.146
,
G.147
,
K.158
,
A.159
,
Y.160
,
D.190
,
M.221
21
PLIP interactions
:
1 interactions with chain A
,
20 interactions with chain B
Hydrogen bonds:
A:Q.294
,
B:Q.38
,
B:S.39
,
B:S.39
,
B:R.59
,
B:L.93
,
B:T.95
,
B:N.117
,
B:H.119
,
B:A.159
,
B:A.159
Hydrophobic interactions:
B:V.37
,
B:Q.38
,
B:K.158
,
B:Y.160
Water bridges:
B:R.59
,
B:R.59
Salt bridges:
B:K.96
,
B:H.119
,
B:H.119
,
B:K.158
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Gruez, A. et al., The Crystal Structure of the Escherichia coli YfdW Gene Product Reveals a New Fold of Two Interlaced Rings Identifying a Wide Family of CoA Transferases. J.Biol.Chem. (2003)
Release Date
2003-09-09
Peptides
Hypothetical protein yfdW:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
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Hypothetical protein yfdW
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1pt7.1
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1pt8.1
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