SMTL ID : 1pt5.1

Crystal structure of gene yfdW of E. coli

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x ACO: ACETYL COENZYME *A(Non-covalent)

ACO.1: 27 residues within 4Å: Chain A: F.34, V.37, S.39, E.58, R.59, Y.80, L.93, N.94, T.95, K.96, N.117, F.118, H.119, A.122, I.145, K.146, G.147, K.158, A.159, Y.160, E.161, D.190, M.221 Chain B: G.269, G.270, Q.294, Q.296 21 PLIP interactions: 20 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:V.37, A:K.158, A:Y.160, A:Y.160 Hydrogen bonds: A:S.39, A:L.93, A:T.95, A:N.117, A:N.117, A:H.119, A:A.159, A:A.159, A:E.161, B:Q.296 Water bridges: A:R.59, A:R.59, A:K.158, A:K.158 Salt bridges: A:K.96, A:H.119, A:K.158 ACO.2: 24 residues within 4Å: Chain A: Q.294 Chain B: F.34, V.37, Q.38, S.39, E.58, R.59, Y.80, L.93, N.94, T.95, K.96, N.117, F.118, H.119, A.122, I.145, K.146, G.147, K.158, A.159, Y.160, D.190, M.221 21 PLIP interactions: 1 interactions with chain A, 20 interactions with chain B Hydrogen bonds: A:Q.294, B:Q.38, B:S.39, B:S.39, B:R.59, B:L.93, B:T.95, B:N.117, B:H.119, B:A.159, B:A.159 Hydrophobic interactions: B:V.37, B:Q.38, B:K.158, B:Y.160 Water bridges: B:R.59, B:R.59 Salt bridges: B:K.96, B:H.119, B:H.119, B:K.158

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gruez, A. et al., The Crystal Structure of the Escherichia coli YfdW Gene Product Reveals a New Fold of Two Interlaced Rings Identifying a Wide Family of CoA Transferases. J.Biol.Chem. (2003)

Release Date

2003-09-09

Peptides

Hypothetical protein yfdW: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Hypothetical protein yfdW

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