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SMTL ID : 1pt9.5
(5 other biounits)
Crystal Structure Analysis of the DIII Component of Transhydrogenase with a Thio-Nicotinamide Nucleotide Analogue
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.42 Å
Oligo State
homo-dimer
Ligands
2 x
SO4
:
SULFATE ION
(Non-functional Binders)
SO4.1:
1 residues within 4Å:
Chain A:
R.164
1
PLIP interactions
:
1 interactions with chain A
Salt bridges:
A:R.164
SO4.4:
1 residues within 4Å:
Chain B:
R.164
2
PLIP interactions
:
2 interactions with chain B
Water bridges:
B:R.164
Salt bridges:
B:R.164
2 x
TAP
:
7-THIONICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
(Non-covalent)
TAP.2:
30 residues within 4Å:
Chain A:
G.53
,
Y.54
,
G.55
,
A.59
,
V.86
,
A.87
,
G.88
,
R.89
,
M.90
,
P.91
,
G.128
,
A.129
,
N.130
,
D.131
,
T.132
,
K.163
,
R.164
,
S.165
,
G.167
,
V.168
,
G.169
,
Y.170
,
G.188
,
D.189
,
A.190
Chain B:
A.146
,
G.147
,
M.148
,
P.149
Ligands:
GOL.3
30
PLIP interactions
:
30 interactions with chain A
Hydrophobic interactions:
A:V.86
Hydrogen bonds:
A:Y.54
,
A:G.55
,
A:G.88
,
A:G.88
,
A:R.89
,
A:N.130
,
A:N.130
,
A:D.131
,
A:D.131
,
A:D.131
,
A:T.132
,
A:K.163
,
A:R.164
,
A:S.165
,
A:S.165
,
A:G.167
,
A:Y.170
,
A:D.189
,
A:A.190
Water bridges:
A:R.89
,
A:R.164
,
A:R.164
,
A:S.165
,
A:S.165
Salt bridges:
A:R.89
,
A:K.163
,
A:R.164
pi-Stacking:
A:Y.170
pi-Cation interactions:
A:R.164
TAP.5:
30 residues within 4Å:
Chain A:
A.146
,
G.147
,
M.148
,
P.149
Chain B:
G.53
,
Y.54
,
G.55
,
A.59
,
V.86
,
A.87
,
G.88
,
R.89
,
M.90
,
P.91
,
G.128
,
A.129
,
N.130
,
D.131
,
T.132
,
K.163
,
R.164
,
S.165
,
G.167
,
V.168
,
G.169
,
Y.170
,
G.188
,
D.189
,
A.190
Ligands:
GOL.6
30
PLIP interactions
:
30 interactions with chain B
Hydrophobic interactions:
B:V.86
Hydrogen bonds:
B:Y.54
,
B:G.55
,
B:G.88
,
B:G.88
,
B:R.89
,
B:N.130
,
B:N.130
,
B:D.131
,
B:D.131
,
B:T.132
,
B:K.163
,
B:R.164
,
B:S.165
,
B:S.165
,
B:G.167
,
B:Y.170
,
B:D.189
,
B:A.190
Water bridges:
B:R.89
,
B:R.164
,
B:R.164
,
B:R.164
,
B:S.165
,
B:S.165
Salt bridges:
B:R.89
,
B:K.163
,
B:R.164
pi-Stacking:
B:Y.170
pi-Cation interactions:
B:R.164
2 x
GOL
:
GLYCEROL
(Non-functional Binders)
GOL.3:
8 residues within 4Å:
Chain A:
H.84
,
V.86
,
D.131
,
I.145
,
M.148
,
P.149
,
V.150
Ligands:
TAP.2
No protein-ligand interaction detected (PLIP)
GOL.6:
8 residues within 4Å:
Chain B:
H.84
,
V.86
,
D.131
,
I.145
,
M.148
,
P.149
,
V.150
Ligands:
TAP.5
No protein-ligand interaction detected (PLIP)
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Singh, A. et al., Interactions between transhydrogenase and thio-nicotinamide analogues of NAD(H) and NADP(H) underline the importance of nucleotide conformational changes in coupling to proton translocation. J.Biol.Chem. (2003)
Release Date
2003-10-07
Peptides
NAD(P) transhydrogenase, mitochondrial:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
A
Export Alignment
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Secondary Structure
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NAD(P) transhydrogenase, mitochondrial
Toggle Identical (AB)
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|
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1u31.3
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|
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