SMTL ID : 1pym.1

PHOSPHOENOLPYRUVATE MUTASE FROM MOLLUSK IN WITH BOUND MG2-OXALATE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-tetramer

Ligands

4 x OXL: OXALATE ION(Non-covalent)

OXL.1: 8 residues within 4Å: Chain A: W.44, S.46, G.47, L.48, D.85, R.159, A.238 Ligands: MG.2 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:G.47, A:L.48, A:D.85, A:D.85 Water bridges: A:D.58, A:D.58, A:D.58, A:K.120, A:R.159, A:R.159, A:R.159 Salt bridges: A:R.159 OXL.3: 8 residues within 4Å: Chain B: W.44, S.46, G.47, L.48, D.85, R.159, A.238 Ligands: MG.4 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:G.47, B:L.48, B:D.58 Water bridges: B:D.85, B:R.159, B:R.159, B:R.159 Salt bridges: B:R.159 OXL.5: 8 residues within 4Å: Chain C: W.44, S.46, G.47, L.48, D.85, R.159, A.238 Ligands: MG.6 11 PLIP interactions: 11 interactions with chain C Hydrogen bonds: C:G.47, C:L.48, C:D.85 Water bridges: C:D.58, C:D.58, C:D.58, C:K.120, C:R.159, C:R.159, C:R.159 Salt bridges: C:R.159 OXL.7: 8 residues within 4Å: Chain D: W.44, S.46, G.47, L.48, D.85, R.159, A.238 Ligands: MG.8 8 PLIP interactions: 8 interactions with chain D Hydrogen bonds: D:G.47, D:L.48, D:D.58 Water bridges: D:D.85, D:R.159, D:R.159, D:R.159 Salt bridges: D:R.159

4 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain A: D.85, D.87, K.120, R.159 Ligands: OXL.1 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.85, H2O.3, H2O.4, H2O.6 MG.4: 4 residues within 4Å: Chain B: D.58, D.85, D.87 Ligands: OXL.3 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.85, H2O.15, H2O.16, H2O.16 MG.6: 5 residues within 4Å: Chain C: D.85, D.87, K.120, R.159 Ligands: OXL.5 4 PLIP interactions: 1 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:D.85, H2O.26, H2O.26, H2O.29 MG.8: 4 residues within 4Å: Chain D: D.58, D.85, D.87 Ligands: OXL.7 4 PLIP interactions: 1 interactions with chain D, 3 Ligand-Water interactions Metal complexes: D:D.85, H2O.38, H2O.38, H2O.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, K. et al., Helix swapping between two alpha/beta barrels: crystal structure of phosphoenolpyruvate mutase with bound Mg(2+)-oxalate. Structure Fold.Des. (1999)

Release Date

1999-07-21

Peptides

PROTEIN (PHOSPHOENOLPYRUVATE MUTASE): ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

PROTEIN (PHOSPHOENOLPYRUVATE MUTASE)

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