SMTL ID : 1q0h.1

Crystal structure of selenomethionine-labelled DXR in complex with fosmidomycin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x FOM: 3-[FORMYL(HYDROXY)AMINO]PROPYLPHOSPHONIC ACID(Non-covalent)

FOM.1: 14 residues within 4Å: Chain A: D.158, S.159, E.160, G.193, S.194, H.217, W.220, M.222, I.226, S.230, N.235, K.236, E.239, M.284 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:S.159, A:E.160, A:E.160, A:G.193, A:S.194, A:S.230, A:N.235, A:K.236, A:E.239 Water bridges: A:K.133, A:D.158, A:G.195, A:G.195 FOM.4: 14 residues within 4Å: Chain B: D.158, S.159, E.160, G.193, S.194, H.217, W.220, M.222, I.226, S.230, N.235, K.236, E.239, M.284 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:S.159, B:E.160, B:G.193, B:S.194, B:S.230, B:N.235, B:K.236, B:E.239 Water bridges: B:K.133, B:G.195, B:G.195

2 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.2: 17 residues within 4Å: Chain A: G.16, S.17, T.18, G.19, S.20, I.21, A.43, G.44, K.45, N.46, D.65, A.108, I.109, V.110, A.113, M.222, G.223 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:G.16, A:T.18, A:T.18, A:T.18, A:G.19, A:S.20, A:I.21, A:G.44, A:K.45, A:N.46, A:D.65, A:V.110, A:G.223 Water bridges: A:G.22, A:G.22, A:N.46, A:K.225 NDP.5: 17 residues within 4Å: Chain B: G.16, S.17, T.18, G.19, S.20, I.21, A.43, G.44, K.45, N.46, D.65, A.108, I.109, V.110, A.113, M.222, G.223 17 PLIP interactions: 17 interactions with chain B Hydrogen bonds: B:G.16, B:T.18, B:T.18, B:T.18, B:G.19, B:S.20, B:I.21, B:G.44, B:K.45, B:N.46, B:D.65, B:V.110, B:G.223 Water bridges: B:G.22, B:G.22, B:N.46, B:K.225

2 x CIT: CITRIC ACID(Non-functional Binders)

CIT.3: 4 residues within 4Å: Chain A: R.360, L.404, A.405, S.406 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.406 Water bridges: A:L.404, A:S.406 Salt bridges: A:R.360, A:R.360 CIT.6: 4 residues within 4Å: Chain B: R.360, L.404, A.405, S.406 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:S.406, B:S.406 Water bridges: B:L.404, B:S.406 Salt bridges: B:R.360, B:R.360

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mac Sweeney, A. et al., The crystal structure of E.coli 1-deoxy-D-xylulose-5-phosphate reductoisomerase in a ternary complex with the antimalarial compound fosmidomycin and NADPH reveals a tight-binding closed enzyme conformation. J.Mol.Biol. (2005)

Release Date

2004-07-20

Peptides

1-deoxy-D-xylulose 5-phosphate reductoisomerase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

1-deoxy-D-xylulose 5-phosphate reductoisomerase

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