SMTL ID : 1q0t.1

Ternary Structure of T4DAM with AdoHcy and DNA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

homo-dimer

Ligands

2 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 2 residues within 4Å: Chain A: A.1, C.2 Ligand excluded by PLIP IOD.2: 2 residues within 4Å: Chain B: A.1, C.2 Ligand excluded by PLIP

2 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.3: 21 residues within 4Å: Chain C: Y.7, G.9, N.10, K.11, F.32, C.33, G.34, G.35, L.36, S.37, V.38, D.50, I.51, Q.52, H.156, F.157, D.171, P.173, Y.181, F.184, W.185 11 PLIP interactions: 11 interactions with chain C Hydrogen bonds: C:Y.7, C:Y.7, C:G.9, C:K.11, C:F.32, C:G.35, C:L.36, C:I.51, C:Q.52, C:H.156 pi-Stacking: C:H.156 SAH.4: 21 residues within 4Å: Chain D: Y.7, G.9, N.10, K.11, F.32, C.33, G.34, G.35, L.36, S.37, V.38, D.50, I.51, Q.52, H.156, F.157, D.171, P.173, Y.181, F.184, W.185 12 PLIP interactions: 12 interactions with chain D Hydrophobic interactions: D:Y.7 Hydrogen bonds: D:Y.7, D:G.9, D:K.11, D:G.35, D:L.36, D:S.37, D:I.51, D:Q.52, D:H.156, D:F.157, D:D.171

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, Z. et al., Structure of the bacteriophage T4 DNA adenine methyltransferase. Nat.Struct.Biol. (2003)

Release Date

2003-09-23

Peptides

DNA adenine methylase: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
A

D
B

DNA adenine methylase

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