SMTL ID : 1q0z.1

Crystal structure of aclacinomycin methylesterase (RdmC) with bound product analogue, 10-decarboxymethylaclacinomycin A (DcmA)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x AKA: 10-DECARBOXYMETHYLACLACINOMYCIN A (DCMAA)(Non-covalent)

AKA.1: 19 residues within 4Å: Chain A: S.102, M.103, T.106, L.126, G.127, G.128, G.129, F.134, D.135, I.138, F.158, H.219, Y.220, L.222, L.224, I.250, A.251 Ligands: SO4.2, 1PE.3 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:M.103, A:F.134, A:D.135, A:I.138, A:F.158, A:I.250, A:I.250 Water bridges: A:T.106, A:G.129, A:I.132 Salt bridges: A:D.135 pi-Stacking: A:F.134

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 9 residues within 4Å: Chain A: G.32, N.33, L.34, M.165, K.182, W.183, E.215 Ligands: AKA.1, 1PE.3 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.32, A:E.215, A:Y.220 Water bridges: A:E.215 Salt bridges: A:K.182

1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.3: 14 residues within 4Å: Chain A: L.34, L.37, G.38, P.40, L.101, S.102, W.183, Y.198, W.201, E.202, A.205, H.276 Ligands: AKA.1, SO4.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.179, A:Y.198 Water bridges: A:R.179, A:K.182

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jansson, A. et al., Crystal structure of aclacinomycin methylesterase with bound product analogues: implications for anthracycline recognition and mechanism. J.Biol.Chem. (2003)

Release Date

2003-11-25

Peptides

aclacinomycin methylesterase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

aclacinomycin methylesterase

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