SMTL ID : 1q1a.1

Structure of the yeast Hst2 protein deacetylase in ternary complex with 2'-O-acetyl ADP ribose and histone peptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.139, C.142, C.166, C.169 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.139, A:C.142, A:C.166, A:C.169

1 x OAD: 2'-O-ACETYL ADENOSINE-5-DIPHOSPHORIBOSE(Non-covalent)

OAD.2: 24 residues within 4Å: Chain A: G.28, A.29, G.30, T.33, D.39, F.40, R.41, S.42, Y.48, Q.111, H.131, I.177, V.178, F.180, G.219, T.220, S.221, V.224, N.244, L.245, Q.264, Y.265, S.266 Chain B: K.5 26 PLIP interactions: 26 interactions with chain A Hydrophobic interactions: A:F.40 Hydrogen bonds: A:A.29, A:G.30, A:T.33, A:T.33, A:F.40, A:R.41, A:R.41, A:S.42, A:Q.111, A:H.131, A:T.220, A:T.220, A:T.220, A:S.221, A:N.244, A:L.245, A:S.266 Water bridges: A:T.33, A:S.42, A:Q.111, A:A.223 Salt bridges: A:R.41, A:R.41, A:H.131 pi-Stacking: A:F.40

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, K. et al., Structure of the yeast Hst2 protein deacetylase in ternary complex with 2'-O-Acetyl ADP ribose and histone peptide. Structure (2003)

Release Date

2003-11-18

Peptides

HST2 protein: A
Histone H4: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HST2 protein

Histone H4

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