SMTL ID : 1q33.1

Crystal structure of human ADP-ribose pyrophosphatase NUDT9

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.81 Å

Oligo State

monomer

Ligands

1 x BGC: beta-D-glucopyranose(Non-covalent)

BGC.1: 10 residues within 4Å: Chain A: A.112, D.114, I.154, G.156, G.157, V.211, D.213, R.215, M.222, H.266 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:I.154, A:G.156, A:D.213, A:R.215, A:H.266 Water bridges: A:R.146, A:R.146, A:R.215, A:R.215 Salt bridges: A:R.215

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: E.32, W.33, Q.34, D.35 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Q.34, A:D.35, A:D.35 Water bridges: A:K.26, A:K.26, A:K.26, A:K.26, A:E.32 SO4.3: 2 residues within 4Å: Chain A: P.50, R.51 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.51 Salt bridges: A:R.51 SO4.4: 5 residues within 4Å: Chain A: Q.56, I.57, S.58, R.88, W.107 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.56, A:I.57, A:S.58 Salt bridges: A:R.88 SO4.5: 3 residues within 4Å: Chain A: E.68, K.69, K.76 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.69 Salt bridges: A:K.76 SO4.6: 4 residues within 4Å: Chain A: K.145, W.152, K.250, K.252 5 PLIP interactions: 5 interactions with chain A Water bridges: A:K.252, A:K.252 Salt bridges: A:K.145, A:K.250, A:K.252 SO4.7: 3 residues within 4Å: Chain A: D.258, K.271, W.281 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.258 Water bridges: A:K.271, A:K.271 Salt bridges: A:K.271

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shen, B.W. et al., The Crystal Structure and Mutational Analysis of Human NUDT9. J.Mol.Biol. (2003)

Release Date

2003-09-30

Peptides

ADP-ribose pyrophosphatase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ADP-ribose pyrophosphatase

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