SMTL ID : 1q36.1

EPSP synthase (Asp313Ala) liganded with tetrahedral reaction intermediate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x SKP: 5-(1-CARBOXY-1-PHOSPHONOOXY-ETHOXYL)-4-HYDROXY-3-PHOSPHONOOXY-CYCLOHEX-1-ENECARBOXYLIC ACID(Non-covalent)

SKP.1: 20 residues within 4Å: Chain A: K.22, S.23, R.27, N.94, A.95, G.96, T.97, R.124, S.169, S.170, Q.171, S.197, Y.200, N.336, K.340, E.341, R.344, H.385, R.386, K.411 33 PLIP interactions: 33 interactions with chain A Hydrophobic interactions: A:Y.200, A:Y.200, A:K.340 Hydrogen bonds: A:K.22, A:G.96, A:T.97, A:S.169, A:S.170, A:Q.171, A:Q.171, A:Q.171, A:S.197, A:S.197, A:N.336, A:K.340, A:K.340 Water bridges: A:R.100, A:S.169, A:S.170, A:R.344, A:R.386, A:R.386, A:K.411 Salt bridges: A:K.22, A:K.22, A:R.27, A:R.124, A:K.340, A:R.344, A:H.385, A:R.386, A:K.411, A:K.411

9 x FMT: FORMIC ACID(Non-functional Binders)

FMT.2: 4 residues within 4Å: Chain A: K.373, L.374, S.397, D.398 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.374, A:D.398 Water bridges: A:D.398 FMT.3: 4 residues within 4Å: Chain A: T.58, V.62, S.63, Y.64 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.64, A:Y.64 FMT.4: 3 residues within 4Å: Chain A: T.141, L.143, R.152 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.152 FMT.5: 5 residues within 4Å: Chain A: T.65, L.66, S.67, R.72, E.74 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.72, A:R.72 FMT.6: 2 residues within 4Å: Chain A: L.60, H.83 2 PLIP interactions: 2 interactions with chain A Water bridges: A:N.78, A:H.83 FMT.7: 5 residues within 4Å: Chain A: E.240, G.264, I.265, G.266, S.269 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.266, A:G.266 Water bridges: A:G.241, A:N.268, A:S.269 FMT.8: 1 residues within 4Å: Chain A: L.88 No protein-ligand interaction detected (PLIP) FMT.9: 2 residues within 4Å: Chain A: L.135, G.137 No protein-ligand interaction detected (PLIP) FMT.10: 3 residues within 4Å: Chain A: A.380, T.381, Y.382 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.381, A:Y.382 Water bridges: A:Y.382, A:Y.382

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Eschenburg, S. et al., A New View of the Mechanisms of UDP-N-Acetylglucosamine Enolpyruvyl Transferase (MurA) and 5-Enolpyruvylshikimate-3-phosphate Synthase (AroA) Derived from X-ray Structures of Their Tetrahedral Reaction Intermediate States. J.Biol.Chem. (2003)

Release Date

2003-12-16

Peptides

3-phosphoshikimate 1-carboxyvinyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

3-phosphoshikimate 1-carboxyvinyltransferase