SMTL ID : 1q3a.1 (2 other biounits)

Crystal structure of the catalytic domain of human matrix metalloproteinase 10

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.119, H.123, H.129 Ligands: NGH.6 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.119, A:H.123, A:H.129 ZN.2: 6 residues within 4Å: Chain A: H.69, D.71, Y.73, H.84, Y.86, H.97 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.69, A:D.71, A:H.84, A:H.97 ZN.7: 4 residues within 4Å: Chain B: H.119, H.123, H.129 Ligands: NGH.12 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.119, B:H.123, B:H.129 ZN.8: 4 residues within 4Å: Chain B: H.69, D.71, H.84, H.97 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.69, B:D.71, B:H.84, B:H.97

6 x CA: CALCIUM ION(Non-covalent)

CA.3: 6 residues within 4Å: Chain A: D.76, G.77, G.79, S.81, D.99, E.102 6 PLIP interactions: 6 interactions with chain A Metal complexes: A:D.76, A:G.77, A:G.79, A:S.81, A:D.99, A:E.102 CA.4: 4 residues within 4Å: Chain A: D.59, G.91, Y.93, D.95 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.59, A:G.91, A:Y.93, A:D.95 CA.5: 3 residues within 4Å: Chain A: D.25, D.100, E.102 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.25, A:D.100, A:D.100, A:E.102, H2O.5 CA.9: 6 residues within 4Å: Chain B: D.76, G.77, G.79, S.81, D.99, E.102 6 PLIP interactions: 6 interactions with chain B Metal complexes: B:D.76, B:G.77, B:G.79, B:S.81, B:D.99, B:E.102 CA.10: 6 residues within 4Å: Chain B: A.58, D.59, G.91, L.92, Y.93, D.95 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.59, B:G.91, B:Y.93, B:D.95, H2O.8 CA.11: 3 residues within 4Å: Chain B: D.25, D.100, E.102 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.100, B:D.100, B:E.102, H2O.6, H2O.7

2 x NGH: N-ISOBUTYL-N-[4-METHOXYPHENYLSULFONYL]GLYCYL HYDROXAMIC ACID(Non-covalent)

NGH.6: 15 residues within 4Å: Chain A: H.80, S.81, L.82, A.83, L.115, V.116, H.119, E.120, H.123, H.129, L.136, P.139, S.143 Chain B: H.80 Ligands: ZN.1 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.82, A:V.116 Hydrogen bonds: A:L.82, A:A.83, A:A.83 NGH.12: 14 residues within 4Å: Chain B: S.81, L.82, A.83, L.115, V.116, H.119, E.120, H.123, H.129, L.136, P.139, L.140, Y.141 Ligands: ZN.7 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:V.116, B:Y.141 Hydrogen bonds: B:L.82, B:A.83, B:A.83 pi-Stacking: B:H.119

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bertini, I. et al., Crystal structure of the catalytic domain of human matrix metalloproteinase 10. J.Mol.Biol. (2004)

Release Date

2004-04-06

Peptides

Stromelysin-2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Stromelysin-2

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