Toggle navigation
Modelling
myWorkspace
Alignment Mode
User Template Mode
DeepView Project Mode
Modelling API
Template Library
Repository
SWISS-MODEL Repository
Repository API
3D-Beacons API
Annotation Projects
TBvar3D
Tools
Structure Assessment
Structure Comparison
QMEAN
Documentation
SWISS-MODEL
Examples
Video Tutorial
New Features
SWISS-MODEL Repository
QMEAN
Structure Assessment
Structure Comparison
TBvar3D
Protein Structure Course
References
Log in
Create Account
SMTL ID : 1q3p.1
(1 other biounit)
Crystal structure of the Shank PDZ-ligand complex reveals a class I PDZ interaction and a novel PDZ-PDZ dimerization
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 2.25 Å
Oligo State
homo-dimer
Ligands
2 x
GLU
-
ALA
-
GLN
-
THR
-
ARG
-
LEU
:
C-terminal hexapeptide from Guanylate kinase-associated protein
(Non-covalent)
GLU-ALA-GLN-THR-ARG-LEU.1:
15 residues within 4Å:
Chain A:
G.20
,
F.21
,
G.22
,
F.23
,
V.24
,
L.25
,
R.26
,
G.27
,
Y.48
,
E.50
,
D.53
,
H.82
,
V.86
,
I.89
,
R.90
14
PLIP interactions
:
14 interactions with chain A
Hydrophobic interactions:
A:F.23
,
A:V.24
,
A:I.89
Hydrogen bonds:
A:F.21
,
A:G.22
,
A:F.23
,
A:F.23
,
A:F.23
,
A:L.25
,
A:L.25
,
A:R.26
,
A:G.27
Salt bridges:
A:R.26
,
A:D.53
GLU-ALA-GLN-THR-ARG-LEU.2:
15 residues within 4Å:
Chain B:
G.20
,
F.21
,
G.22
,
F.23
,
V.24
,
L.25
,
R.26
,
G.27
,
A.28
,
Y.48
,
E.50
,
D.53
,
H.82
,
V.86
,
I.89
19
PLIP interactions
:
19 interactions with chain B
Hydrophobic interactions:
B:F.23
,
B:V.24
,
B:R.26
,
B:V.86
,
B:I.89
Hydrogen bonds:
B:F.21
,
B:G.22
,
B:F.23
,
B:F.23
,
B:L.25
,
B:L.25
,
B:R.26
,
B:G.27
,
B:G.27
,
B:E.50
,
B:H.82
Water bridges:
B:A.28
Salt bridges:
B:R.26
,
B:D.53
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Im, Y.J. et al., Crystal structure of the Shank PDZ-ligand complex reveals a class I PDZ interaction and a novel PDZ-PDZ dimerization. J.Biol.Chem. (2003)
Release Date
2004-01-27
Peptides
Shank1:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
Export Alignment
FASTA format
Clustal Format
PNG Image
Secondary Structure
None
DSSP
PSIPRED
SSpro
Colour Scheme
Fade Mismatches
Enhance Mismatches
Chain
Unique Chain
Rainbow
2° Structure
Bfactor
Bfactor Range
SOA
Entropy
Clustal
Hydrophobic
Size
Charged
Polar
Proline
Ser/Thr
Cysteine
Aliphatic
Aromatic
No Colour
Background
3D Viewer
NGL
PV
2D
FASTA
Multi FASTA
ClustalW
PNG
Shank1
Related Entries With Identical Sequence
1q3o.1
|
1q3p.2
Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog
Background
Transparent
Resolution
Low
Medium
High
Extreme