- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.00 Å
- Oligo State
- homo-16-mer
- Ligands
- 14 x MG: MAGNESIUM ION(Non-covalent)
- 16 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.2: 24 residues within 4Å:- Chain A: T.42, L.43, G.44, P.45, N.63, D.95, G.96, T.97, T.98, T.99, T.163, G.164, A.410, G.411, G.412, I.447, L.451, I.479, D.480, V.481, F.482, I.494, E.496
- Ligands: MG.1
17 PLIP interactions:17 interactions with chain A- Hydrogen bonds: A:G.44, A:N.63, A:D.95, A:G.96, A:T.97, A:T.97, A:T.98, A:T.98, A:T.99, A:T.99, A:T.99, A:G.411, A:G.412, A:D.480, A:D.480, A:V.481, A:E.496
ADP.4: 24 residues within 4Å:- Chain B: T.42, L.43, G.44, P.45, N.63, D.95, G.96, T.97, T.98, T.99, G.164, A.410, G.411, G.412, I.447, L.451, I.479, D.480, V.481, F.482, I.494, E.496, K.501
- Ligands: MG.3
16 PLIP interactions:16 interactions with chain B- Hydrogen bonds: B:G.44, B:N.63, B:G.96, B:T.97, B:T.98, B:T.98, B:T.99, B:T.99, B:T.99, B:G.411, B:G.412, B:D.480, B:D.480, B:V.481, B:E.496, B:K.501
ADP.6: 25 residues within 4Å:- Chain C: T.42, L.43, G.44, P.45, N.63, D.95, G.96, T.97, T.98, T.99, T.163, G.164, A.410, G.411, G.412, I.447, L.451, I.479, D.480, V.481, F.482, I.494, E.496, K.501
- Ligands: MG.5
17 PLIP interactions:17 interactions with chain C- Hydrogen bonds: C:G.44, C:N.63, C:G.96, C:T.97, C:T.97, C:T.98, C:T.98, C:T.99, C:T.99, C:T.99, C:G.411, C:G.412, C:D.480, C:D.480, C:V.481, C:E.496, C:K.501
ADP.8: 23 residues within 4Å:- Chain D: T.42, L.43, G.44, P.45, N.63, D.95, G.96, T.97, T.98, T.99, T.163, G.164, A.410, G.411, G.412, L.451, I.479, D.480, V.481, F.482, I.494, E.496
- Ligands: MG.7
17 PLIP interactions:17 interactions with chain D- Hydrogen bonds: D:G.44, D:N.63, D:D.95, D:G.96, D:T.97, D:T.97, D:T.98, D:T.98, D:T.99, D:T.99, D:T.99, D:G.411, D:G.412, D:D.480, D:V.481, D:E.496, D:K.501
ADP.10: 25 residues within 4Å:- Chain E: T.42, L.43, G.44, P.45, N.63, D.95, G.96, T.97, T.98, T.99, T.163, G.164, A.410, G.411, G.412, I.447, L.451, I.479, D.480, V.481, F.482, I.494, E.496, K.501
- Ligands: MG.9
17 PLIP interactions:17 interactions with chain E- Hydrogen bonds: E:G.44, E:N.63, E:D.95, E:G.96, E:T.97, E:T.97, E:T.98, E:T.98, E:T.99, E:T.99, E:T.99, E:G.411, E:G.412, E:D.480, E:V.481, E:E.496, E:K.501
ADP.11: 23 residues within 4Å:- Chain F: T.42, L.43, G.44, P.45, N.63, D.95, G.96, T.97, T.98, T.99, G.164, A.410, G.411, G.412, I.447, L.451, I.479, D.480, V.481, F.482, I.494, E.496, K.501
17 PLIP interactions:17 interactions with chain F- Hydrogen bonds: F:G.44, F:N.63, F:D.95, F:G.96, F:T.97, F:T.97, F:T.98, F:T.98, F:T.99, F:T.99, F:T.99, F:G.411, F:G.412, F:D.480, F:V.481, F:E.496, F:K.501
ADP.13: 22 residues within 4Å:- Chain G: T.42, L.43, G.44, P.45, N.63, D.95, G.96, T.97, T.98, T.99, G.164, A.410, G.411, I.447, L.451, I.479, D.480, V.481, F.482, I.494, E.496
- Ligands: MG.12
15 PLIP interactions:15 interactions with chain G- Hydrogen bonds: G:G.44, G:N.63, G:D.95, G:G.96, G:T.97, G:T.98, G:T.98, G:T.99, G:T.99, G:T.99, G:G.411, G:G.412, G:D.480, G:V.481, G:E.496
ADP.15: 23 residues within 4Å:- Chain H: T.42, L.43, G.44, P.45, N.63, D.95, G.96, T.97, T.98, T.99, T.163, G.164, A.410, G.411, I.447, L.451, I.479, D.480, V.481, F.482, I.494, E.496
- Ligands: MG.14
17 PLIP interactions:17 interactions with chain H- Hydrogen bonds: H:G.44, H:N.63, H:D.95, H:G.96, H:T.97, H:T.97, H:T.98, H:T.98, H:T.99, H:T.99, H:T.99, H:G.411, H:G.412, H:D.480, H:D.480, H:V.481, H:E.496
ADP.17: 24 residues within 4Å:- Chain I: T.42, L.43, G.44, P.45, N.63, D.95, G.96, T.97, T.98, T.99, T.163, G.164, A.410, G.411, G.412, I.447, L.451, I.479, D.480, V.481, F.482, I.494, E.496
- Ligands: MG.16
15 PLIP interactions:15 interactions with chain I- Hydrogen bonds: I:G.44, I:N.63, I:D.95, I:G.96, I:T.97, I:T.97, I:T.98, I:T.99, I:T.99, I:T.99, I:G.411, I:G.412, I:D.480, I:V.481, I:E.496
ADP.19: 24 residues within 4Å:- Chain J: T.42, L.43, G.44, P.45, N.63, D.95, G.96, T.97, T.98, T.99, G.164, A.410, G.411, G.412, I.447, L.451, I.479, D.480, V.481, F.482, I.494, E.496, K.501
- Ligands: MG.18
16 PLIP interactions:16 interactions with chain J- Hydrogen bonds: J:G.44, J:N.63, J:G.96, J:T.97, J:T.97, J:T.98, J:T.98, J:T.99, J:T.99, J:T.99, J:G.411, J:G.412, J:D.480, J:V.481, J:E.496, J:K.501
ADP.21: 25 residues within 4Å:- Chain K: T.42, L.43, G.44, P.45, N.63, D.95, G.96, T.97, T.98, T.99, T.163, G.164, A.410, G.411, G.412, I.447, L.451, I.479, D.480, V.481, F.482, I.494, E.496, K.501
- Ligands: MG.20
17 PLIP interactions:17 interactions with chain K- Hydrogen bonds: K:G.44, K:N.63, K:G.96, K:T.97, K:T.97, K:T.97, K:T.98, K:T.98, K:T.99, K:T.99, K:T.99, K:G.411, K:G.412, K:D.480, K:V.481, K:E.496, K:K.501
ADP.23: 23 residues within 4Å:- Chain L: T.42, L.43, G.44, P.45, N.63, D.95, G.96, T.97, T.98, T.99, T.163, G.164, A.410, G.411, G.412, L.451, I.479, D.480, V.481, F.482, I.494, E.496
- Ligands: MG.22
18 PLIP interactions:18 interactions with chain L- Hydrogen bonds: L:G.44, L:N.63, L:D.95, L:G.96, L:T.97, L:T.97, L:T.98, L:T.98, L:T.99, L:T.99, L:T.99, L:G.411, L:G.412, L:D.480, L:D.480, L:V.481, L:E.496, L:K.501
ADP.25: 25 residues within 4Å:- Chain M: T.42, L.43, G.44, P.45, N.63, D.95, G.96, T.97, T.98, T.99, T.163, G.164, A.410, G.411, G.412, I.447, L.451, I.479, D.480, V.481, F.482, I.494, E.496, K.501
- Ligands: MG.24
18 PLIP interactions:18 interactions with chain M- Hydrogen bonds: M:G.44, M:N.63, M:D.95, M:G.96, M:T.97, M:T.97, M:T.98, M:T.98, M:T.99, M:T.99, M:T.99, M:G.411, M:G.412, M:D.480, M:D.480, M:V.481, M:E.496, M:K.501
ADP.26: 23 residues within 4Å:- Chain N: T.42, L.43, G.44, P.45, N.63, D.95, G.96, T.97, T.98, T.99, G.164, A.410, G.411, G.412, I.447, L.451, I.479, D.480, V.481, F.482, I.494, E.496, K.501
19 PLIP interactions:19 interactions with chain N- Hydrogen bonds: N:G.44, N:N.63, N:D.95, N:G.96, N:T.97, N:T.97, N:T.97, N:T.98, N:T.98, N:T.99, N:T.99, N:T.99, N:G.411, N:G.412, N:D.480, N:D.480, N:V.481, N:E.496, N:K.501
ADP.28: 22 residues within 4Å:- Chain O: T.42, L.43, G.44, P.45, N.63, D.95, G.96, T.97, T.98, T.99, G.164, A.410, G.411, I.447, L.451, I.479, D.480, V.481, F.482, I.494, E.496
- Ligands: MG.27
17 PLIP interactions:17 interactions with chain O- Hydrogen bonds: O:G.44, O:N.63, O:D.95, O:G.96, O:T.97, O:T.97, O:T.98, O:T.98, O:T.99, O:T.99, O:T.99, O:G.411, O:G.412, O:D.480, O:D.480, O:V.481, O:E.496
ADP.30: 23 residues within 4Å:- Chain P: T.42, L.43, G.44, P.45, N.63, D.95, G.96, T.97, T.98, T.99, T.163, G.164, A.410, G.411, I.447, L.451, I.479, D.480, V.481, F.482, I.494, E.496
- Ligands: MG.29
17 PLIP interactions:17 interactions with chain P- Hydrogen bonds: P:G.44, P:N.63, P:D.95, P:G.96, P:T.97, P:T.97, P:T.97, P:T.98, P:T.98, P:T.99, P:T.99, P:T.99, P:G.411, P:G.412, P:D.480, P:V.481, P:E.496
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shomura, Y. et al., Crystal Structures of the Group II Chaperonin from Thermococcus strain KS-1: Steric Hindrance by the Substituted Amino Acid, and Inter-subunit Rearrangement between Two Crystal Forms. J.Mol.Biol. (2004)
- Release Date
- 2004-01-27
- Peptides
- Thermosome alpha subunit: ABCDEFGHIJKLMNOP
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
AJ
BK
CL
DM
EN
FO
GP
H
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.00 Å
- Oligo State
- homo-16-mer
- Ligands
- 14 x MG: MAGNESIUM ION(Non-covalent)
- 16 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shomura, Y. et al., Crystal Structures of the Group II Chaperonin from Thermococcus strain KS-1: Steric Hindrance by the Substituted Amino Acid, and Inter-subunit Rearrangement between Two Crystal Forms. J.Mol.Biol. (2004)
- Release Date
- 2004-01-27
- Peptides
- Thermosome alpha subunit: ABCDEFGHIJKLMNOP
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
AJ
BK
CL
DM
EN
FO
GP
H