SMTL ID : 1q47.1

Structure of the Semaphorin 3A Receptor-Binding Module

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-dimer

Ligands

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: N.28, H.51, K.65, V.67 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.28, A:H.51 Salt bridges: A:H.51 NAG.2: 5 residues within 4Å: Chain A: Y.99, N.100, Q.101, T.102, H.103 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Y.99, A:N.100, A:H.103 Hydrogen bonds: A:N.100, A:N.100, A:Q.101 Salt bridges: A:H.103 NAG.3: 4 residues within 4Å: Chain B: N.28, H.51, K.65, V.67 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:V.67 Hydrogen bonds: B:N.28, B:K.65 Salt bridges: B:H.51 NAG.4: 4 residues within 4Å: Chain B: Y.99, N.100, T.102, Q.133 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.133

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Antipenko, A. et al., Structure of the semaphorin-3A receptor binding module. Neuron (2003)

Release Date

2004-08-03

Peptides

Semaphorin 3A: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Semaphorin 3A