SMTL ID : 1q4s.1

Crystal structure of Arthrobacter sp. strain SU 4-hydroxybenzoyl CoA thioesterase complexed with CoA and 4-hydroxybenzoic acid

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-tetramer

Ligands

4 x COA: COENZYME A(Non-covalent)

COA.1: 21 residues within 4Å: Chain A: M.90, V.92, G.93, Q.94, A.145, R.147, P.148, R.150 Chain B: Q.58, V.63, G.65, F.100, F.101, R.102, P.103 Chain C: H.117, G.119, S.120, T.121, T.122 Ligands: PHB.3 20 PLIP interactions: 11 interactions with chain A, 6 interactions with chain B, 3 interactions with chain C Hydrophobic interactions: A:V.92, A:A.145, B:F.100 Hydrogen bonds: A:G.93, A:G.93, A:P.148, A:R.150, A:R.150, A:R.150, B:F.100, C:S.120, C:T.121, C:T.122 Salt bridges: A:R.150, B:R.102 pi-Cation interactions: A:R.150, A:R.150 Water bridges: B:R.102, B:R.102, B:V.104 COA.2: 21 residues within 4Å: Chain A: Q.58, V.63, G.65, F.100, F.101, R.102, P.103 Chain B: M.90, V.92, G.93, Q.94, A.145, R.147, P.148, R.150 Chain D: H.117, G.119, S.120, T.121, T.122 Ligands: PHB.4 18 PLIP interactions: 3 interactions with chain A, 4 interactions with chain D, 11 interactions with chain B Hydrophobic interactions: A:F.100, B:V.92, B:Q.94, B:A.145 Hydrogen bonds: A:F.100, D:S.120, D:T.121, D:T.122, D:T.122, B:G.93, B:G.93, B:P.148 Salt bridges: A:R.102, B:R.150 Water bridges: B:R.150, B:R.150 pi-Cation interactions: B:R.150, B:R.150 COA.5: 21 residues within 4Å: Chain A: H.117, G.119, S.120, T.121, T.122 Chain C: M.90, V.92, G.93, Q.94, A.145, R.147, P.148, R.150 Chain D: Q.58, V.63, G.65, F.100, F.101, R.102, P.103 Ligands: PHB.7 22 PLIP interactions: 11 interactions with chain C, 6 interactions with chain D, 5 interactions with chain A Hydrophobic interactions: C:V.92, C:A.145, D:F.100 Hydrogen bonds: C:G.93, C:G.93, C:P.148, C:R.150, C:R.150, C:R.150, D:F.100, A:S.120, A:T.121, A:T.121, A:T.122, A:T.122 Salt bridges: C:R.150, D:R.102 pi-Cation interactions: C:R.150, C:R.150 Water bridges: D:R.102, D:R.102, D:V.104 COA.6: 21 residues within 4Å: Chain B: H.117, G.119, S.120, T.121, T.122 Chain C: Q.58, V.63, G.65, F.100, F.101, R.102, P.103 Chain D: M.90, V.92, G.93, Q.94, A.145, R.147, P.148, R.150 Ligands: PHB.8 19 PLIP interactions: 11 interactions with chain D, 5 interactions with chain B, 3 interactions with chain C Hydrophobic interactions: D:V.92, D:Q.94, D:A.145, C:F.100 Hydrogen bonds: D:G.93, D:G.93, D:P.148, B:S.120, B:T.121, B:T.122, C:F.100 Water bridges: D:R.150, D:R.150, B:T.121, B:T.121 Salt bridges: D:R.150, C:R.102 pi-Cation interactions: D:R.150, D:R.150

4 x PHB: P-HYDROXYBENZOIC ACID(Non-covalent)

PHB.3: 11 residues within 4Å: Chain A: L.15, E.73, M.74, T.77, E.78, G.93 Chain B: Q.58, W.60, H.64, G.65 Ligands: COA.1 14 PLIP interactions: 8 interactions with chain A, 6 interactions with chain B Hydrophobic interactions: A:M.74, A:T.77, A:E.78, B:Q.58, B:Q.58 Hydrogen bonds: A:E.73, A:T.77, A:E.78, A:G.93, B:G.65 Water bridges: A:D.31, B:R.59 Salt bridges: B:H.64 pi-Stacking: B:H.64 PHB.4: 11 residues within 4Å: Chain A: Q.58, W.60, H.64, G.65 Chain B: L.15, E.73, M.74, T.77, E.78, G.93 Ligands: COA.2 13 PLIP interactions: 8 interactions with chain B, 5 interactions with chain A Hydrophobic interactions: B:M.74, B:T.77, B:E.78, A:Q.58, A:Q.58 Hydrogen bonds: B:T.77, B:T.77, B:G.93, A:G.65 Water bridges: B:D.31, B:D.31 Salt bridges: A:H.64 pi-Stacking: A:H.64 PHB.7: 11 residues within 4Å: Chain C: L.15, E.73, M.74, T.77, E.78, G.93 Chain D: Q.58, W.60, H.64, G.65 Ligands: COA.5 13 PLIP interactions: 6 interactions with chain D, 7 interactions with chain C Hydrophobic interactions: D:Q.58, D:Q.58, C:M.74, C:T.77, C:E.78 Hydrogen bonds: D:G.65, C:T.77, C:T.77, C:G.93 Water bridges: D:R.59, C:D.31 Salt bridges: D:H.64 pi-Stacking: D:H.64 PHB.8: 11 residues within 4Å: Chain C: Q.58, W.60, H.64, G.65 Chain D: L.15, E.73, M.74, T.77, E.78, G.93 Ligands: COA.6 14 PLIP interactions: 9 interactions with chain D, 5 interactions with chain C Hydrophobic interactions: D:M.74, D:T.77, D:E.78, C:Q.58, C:Q.58 Hydrogen bonds: D:E.73, D:T.77, D:E.78, D:G.93, C:G.65 Water bridges: D:D.31, D:D.31 Salt bridges: C:H.64 pi-Stacking: C:H.64

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thoden, J.B. et al., The Structure of 4-Hydroxybenzoyl-CoA Thioesterase from Arthrobacter sp. strain SU. J.Biol.Chem. (2003)

Release Date

2003-09-23

Peptides

Thioesterase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Thioesterase

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